RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 HOXD9P28356 352 aaPredicted RBP11.65□□□□□ -0.55
USHBP1-201ENST00000252597 YBEYP58557 167 aaPredicted RBP11.65□□□□□ -0.55
USHBP1-201ENST00000252597 CHRNA6Q15825 494 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 HIST2H2ACQ16777 129 aaPredicted RBP11.65□□□□□ -0.55
USHBP1-201ENST00000252597 ZNF404Q494X3 552 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 MFSD4BQ5TF39 518 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 CCBE1Q6UXH8 406 aaPredicted RBP11.65□□□□□ -0.55
USHBP1-201ENST00000252597 TAGAPQ8N103 731 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 SVOPLQ8N434 492 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 MYLIPQ8WY64 445 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 SLC39A13Q96H72 371 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 ZFYVE1Q9HBF4 777 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 C8orf4Q9NR00 106 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 SCML2Q9UQR0 700 aa11.65□□□□□ -0.55
USHBP1-201ENST00000252597 A0A0U1RQF3 1178 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 LOC110117498-PIK3R3F6TDL0 507 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 IDH3BO43837 385 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 PRLP01236 227 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 CSF2P04141 144 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 ASGR1P07306 291 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 ACPPP15309 386 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 CRISP3P54108 245 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 SPIBQ01892 262 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 SELENBP1Q13228 472 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 COQ5Q5HYK3 327 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 UBE2R2Q712K3 238 aaPredicted RBP11.64□□□□□ -0.55
USHBP1-201ENST00000252597 TSPAN33Q86UF1 283 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 CCDC117Q8IWD4 279 aaPredicted RBP11.64□□□□□ -0.55
USHBP1-201ENST00000252597 TCAIMQ8N3R3 496 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 TTC30BQ8N4P2 665 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 SVOPQ8N4V2 548 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 BEND7Q8N7W2 519 aaPredicted RBP11.64□□□□□ -0.55
USHBP1-201ENST00000252597 OR4K1Q8NGD4 311 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 OR6Q1Q8NGQ2 317 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 STARD8Q92502 1023 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 DNASE1L2Q92874 299 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 C1orf74Q96LT6 269 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 TP63Q9H3D4 680 aaPredicted RBP11.64□□□□□ -0.55
USHBP1-201ENST00000252597 DCAF13Q9NV06 445 aaKnown RBP11.64□□□□□ -0.55
USHBP1-201ENST00000252597 PMF1-BGLAPU3KQ54 211 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 TRIM64CA6NLI5 447 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 OR2AG2A6NM03 316 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 TPST2O60704 377 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 CLDN9O95484 217 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 ESR1P03372 595 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 IL6P05231 212 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 ATXN8OSP0DMR3 200 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 CKMT1AP12532 417 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 DGKAP23743 735 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 HOXC13P31276 330 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 PTGER3P43115 390 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 PRIM2P49643 509 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 IRF8Q02556 426 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 CPZQ66K79 652 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 SBSNQ6UWP8 590 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 ST13P5Q8NFI4 369 aaPredicted RBP11.64□□□□□ -0.55
USHBP1-201ENST00000252597 KCNJ9Q92806 393 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 RHBDF1Q96CC6 855 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 PSKH2Q96QS6 385 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 CNPPD1Q9BV87 410 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 TMEM121BQ9BXQ6 578 aaPredicted RBP11.64□□□□□ -0.55
USHBP1-201ENST00000252597 ABCB9Q9NP78 766 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 ACOT13Q9NPJ3 140 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 CTPS2Q9NRF8 586 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 MALT1Q9UDY8 824 aa11.64□□□□□ -0.55
USHBP1-201ENST00000252597 TMEFF2Q9UIK5 374 aaPredicted RBP11.64□□□□□ -0.55
USHBP1-201ENST00000252597 SOBPA7XYQ1 873 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 CTDSP2O14595 271 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TAPBPO15533 448 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TLL1O43897 1013 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 MED26O95402 600 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ANXA5P08758 320 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 WEE1P30291 646 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 FEN1P39748 380 aaKnown RBP11.63□□□□□ -0.55
USHBP1-201ENST00000252597 CTSKP43235 329 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 NKX3-2P78367 333 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 PTCHD3Q3KNS1 767 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ARMC4Q5T2S8 1044 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 MFSD14CQ5VZR4 134 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ZNF467Q7Z7K2 595 aaPredicted RBP11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ZNF605Q86T29 641 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 PAPD5Q8NDF8 572 aaKnown RBP11.63□□□□□ -0.55
USHBP1-201ENST00000252597 OR8J3Q8NGG0 315 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 NECTIN4Q96NY8 510 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ACPTQ9BZG2 426 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ARHGAP39Q9C0H5 1083 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TIGARQ9NQ88 270 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ACSL6Q9UKU0 697 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 RNF6Q9Y252 685 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 PCDHGA12O60330 932 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 SOX14O95416 240 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TGM4P49221 684 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TYSND1Q2T9J0 566 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 HKDC1Q2TB90 917 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 ZBTB2Q8N680 514 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 AMER2Q8N7J2 671 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 VANGL1Q8TAA9 524 aaPredicted RBP11.63□□□□□ -0.55
USHBP1-201ENST00000252597 WBP2Q969T9 261 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 FEVQ99581 238 aa11.63□□□□□ -0.55
USHBP1-201ENST00000252597 TTYH2Q9BSA4 534 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms