RNA–Protein interactions for RNA: ENST00000248668.4

LRFN1-201, Transcript of leucine rich repeat and fibronectin type III domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LRFN1, Length 3,381 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1-201ENST00000248668 LAPTM4AQ15012 233 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 PLEKHS1Q5SXH7 462 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 LIPIQ6XZB0 460 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 THOC6Q86W42 341 aaKnown RBP15.29■□□□□ 0.04
LRFN1-201ENST00000248668 MFSD2AQ8NA29 543 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 CENPOQ9BU64 300 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 OTOL1A6NHN0 477 aaPredicted RBP15.29■□□□□ 0.04
LRFN1-201ENST00000248668 SLC36A3Q495N2 470 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 CYBRD1Q53TN4 286 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 NOXRED1Q6NXP6 359 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 DOK6Q6PKX4 331 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 TRAPPC5Q8IUR0 188 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 SYT12Q8IV01 421 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 NETO1Q8TDF5 533 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 BPIFB1Q8TDL5 484 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 BTN2A2Q8WVV5 523 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 GLYATL1Q969I3 302 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 RAD9AQ99638 391 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 PAIP1Q9H074 479 aaKnown RBP15.29■□□□□ 0.04
LRFN1-201ENST00000248668 SERHLQ9NQF3 203 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 RBMX2Q9Y388 322 aaKnown RBP15.29■□□□□ 0.04
LRFN1-201ENST00000248668 ATG2BQ96BY7 2078 aa15.29■□□□□ 0.04
LRFN1-201ENST00000248668 PRRT4C9JH25 899 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 TULP3O75386 442 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 SERPINA1P01009 418 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 CST1P01037 141 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 FTH1P02794 183 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 GBAP04062 536 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 RAP2AP10114 183 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 SLC5A2P31639 672 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 CASP9P55211 416 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 DOC2AQ14183 400 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 GBX1Q14549 363 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 RUNDC3AQ59EK9 446 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 ZDHHC20Q5W0Z9 365 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 AGTRAPQ6RW13 159 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 RIMKLAQ8IXN7 391 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 GPR65Q8IYL9 337 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 GLB1L3Q8NCI6 653 aaPredicted RBP15.28■□□□□ 0.04
LRFN1-201ENST00000248668 LZICQ8WZA0 190 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 SLC47A1Q96FL8 570 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 VPS4AQ9UN37 437 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 ZNF106Q9H2Y7 1883 aaKnown RBP15.28■□□□□ 0.04
LRFN1-201ENST00000248668 GRXCR1A8MXD5 290 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 RFXANKO14593 260 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 FOXD2O60548 495 aaPredicted RBP15.28■□□□□ 0.04
LRFN1-201ENST00000248668 DEAF1O75398 565 aaPredicted RBP15.28■□□□□ 0.04
LRFN1-201ENST00000248668 ADH5P11766 374 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 STT3AP46977 705 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 HNMTP50135 292 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 EPHA5P54756 1037 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 CLDN8P56748 225 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 ST8SIA6P61647 398 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 SPESP1Q6UW49 350 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 CCDC80Q76M96 950 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 GPR180Q86V85 440 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 GOLM1Q8NBJ4 401 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 HAUS8Q9BT25 410 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 REXO4Q9GZR2 422 aaKnown RBP15.28■□□□□ 0.04
LRFN1-201ENST00000248668 RBM38Q9H0Z9 239 aaKnown RBP15.28■□□□□ 0.04
LRFN1-201ENST00000248668 OR2AG1Q9H205 316 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 XYLBO75191 536 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 ETHE1O95571 254 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 AMD1P17707 334 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 STARD3Q14849 445 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 SPATS1Q496A3 300 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 IRAK1BP1Q5VVH5 260 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 CRTC3Q6UUV7 619 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 CFAP206Q8IYR0 622 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 CLECL1Q8IZS7 167 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 TRAM1L1Q8N609 369 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 PACRGLQ8N7B6 248 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 PAPD5Q8NDF8 572 aaKnown RBP15.28■□□□□ 0.04
LRFN1-201ENST00000248668 VN1R2Q8NFZ6 395 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 OR4K3Q96R72 315 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 C19orf43Q9BQ61 176 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 DPH2Q9BQC3 489 aaPredicted RBP15.28■□□□□ 0.04
LRFN1-201ENST00000248668 ZSCAN5AQ9BUG6 496 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 KAT8Q9H7Z6 458 aaKnown RBP15.28■□□□□ 0.04
LRFN1-201ENST00000248668 IRAK3Q9Y616 596 aa15.28■□□□□ 0.04
LRFN1-201ENST00000248668 UPK1AO00322 258 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 ZNF682O95780 498 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 ALBP02768 609 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 MPC1LP0DKB6 136 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 ELK4P28324 431 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 CAPGP40121 348 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 SH3BGRP55822 239 aaPredicted RBP15.27■□□□□ 0.04
LRFN1-201ENST00000248668 SPIDRQ14159 915 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 FNDC3BQ53EP0 1204 aaKnown RBP15.27■□□□□ 0.04
LRFN1-201ENST00000248668 PRSS36Q5K4E3 855 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 ZNF621Q6ZSS3 439 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 SYTL1Q8IYJ3 562 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 MICU2Q8IYU8 434 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 DDHD1Q8NEL9 900 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 NRTNQ99748 197 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 STOX2Q9P2F5 926 aaPredicted RBP15.27■□□□□ 0.04
LRFN1-201ENST00000248668 PRKAG2Q9UGJ0 569 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 SAP18O00422 153 aaKnown RBP15.27■□□□□ 0.04
LRFN1-201ENST00000248668 MYF6P23409 242 aa15.27■□□□□ 0.04
LRFN1-201ENST00000248668 DDX6P26196 483 aaKnown RBP eCLIP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms