RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 AASDHQ4L235 1098 aaPredicted RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 OR8J3Q8NGG0 315 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 SELENOMQ8WWX9 145 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 HDAC2Q92769 488 aaKnown RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 USP7Q93009 1102 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 UROC1Q96N76 676 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 WFDC6Q9BQY6 131 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 SIAEQ9HAT2 523 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 ANGPTL3Q9Y5C1 460 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 CEP290O15078 2479 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 THSD7BQ9C0I4 1608 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 ILVBLA1L0T0 632 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 TRIM43BA6NCK2 446 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 KCNK5O95279 499 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 CPSF4O95639 269 aaKnown RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 ACRV1P26436 265 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 GTF2E2P29084 291 aaKnown RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 TGFBR2P37173 567 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 RPS14P62263 151 aaKnown RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 PHEXP78562 749 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 LSM11P83369 360 aaKnown RBP eCLIP10.38□□□□□ -0.756e-18■■■■■ 77.1
USP28-201ENST00000003302 ASTLQ6HA08 431 aaPredicted RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 TSPEARQ8WU66 669 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 FAM120BQ96EK7 910 aaKnown RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 MYO19Q96H55 970 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 ZNF300Q96RE9 604 aaPredicted RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 PARVBQ9HBI1 364 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 PDP1Q9P0J1 537 aaPredicted RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 TRIM17Q9Y577 477 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 COL4A6Q14031 1691 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 IQCA1LA6NCM1 817 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 TMEM221A6NGB7 291 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 H7C0S8 307 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 VPS4BO75351 444 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 ALDH2P05091 517 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 IGFBP1P08833 259 aaPredicted RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 SLC10A3P09131 477 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 PSMA3P25788 255 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 PTGER1P34995 402 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 CLCN4P51793 760 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 CACNG1Q06432 222 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 GRIK2Q13002 908 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 OXA1LQ15070 435 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 OLIG3Q7RTU3 272 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 HMGN2P46Q86SG4 172 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 ZBTB8BQ8NAP8 495 aaPredicted RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 CHST14Q8NCH0 376 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 RAB2BQ8WUD1 216 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 SH3KBP1Q96B97 665 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 CCDC115Q96NT0 180 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 SLIRPQ9GZT3 109 aaKnown RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 C1orf109Q9NX04 203 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 BLOC1S6Q9UL45 172 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 EXO1Q9UQ84 846 aaKnown RBP10.38□□□□□ -0.75
USP28-201ENST00000003302 CCL26Q9Y258 94 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 OARD1Q9Y530 152 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 HCFC2Q9Y5Z7 792 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 SCN2AQ99250 2005 aa10.38□□□□□ -0.75
USP28-201ENST00000003302 KCNE1BA0A087WTH5 132 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 SOBPA7XYQ1 873 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 CLDN11O75508 207 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 CSNK1DP48730 415 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 SLC11A2P49281 568 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 MRPL19P49406 292 aaKnown RBP10.37□□□□□ -0.75
USP28-201ENST00000003302 MC1RQ01726 317 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 HECTD3Q5T447 861 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 TRIM46Q7Z4K8 759 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 BBS7Q8IWZ6 715 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 RAD18Q9NS91 495 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 RHCGQ9UBD6 479 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 EIF3LQ9Y262 564 aaKnown RBP10.37□□□□□ -0.75
USP28-201ENST00000003302 TULP3O75386 442 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 ZNF189O75820 626 aaPredicted RBP10.37□□□□□ -0.75
USP28-201ENST00000003302 WDR47O94967 919 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 TRBC1P01850 177 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 ENGP17813 658 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 PREPP48147 710 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 MEF2AQ02078 507 aaPredicted RBP10.37□□□□□ -0.75
USP28-201ENST00000003302 BTG3Q14201 252 aaPredicted RBP10.37□□□□□ -0.75
USP28-201ENST00000003302 CLCA4Q14CN2 919 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 INAQ16352 499 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 GRAMD4Q6IC98 578 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 CRTC1Q6UUV9 634 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 ZNF621Q6ZSS3 439 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 DEFB128Q7Z7B8 93 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 ADAMTSL2Q86TH1 951 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 RBM12BQ8IXT5 1001 aaKnown RBP10.37□□□□□ -0.75
USP28-201ENST00000003302 ZBTB2Q8N680 514 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 GOLM1Q8NBJ4 401 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 PIK3C3Q8NEB9 887 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 GPR156Q8NFN8 814 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 OR4K1Q8NGD4 311 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 TTPALQ9BTX7 342 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 ADGRE3Q9BY15 652 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 AASDHPPTQ9NRN7 309 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 RAPGEFL1Q9UHV5 662 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 NAALAD2Q9Y3Q0 740 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 TTC34A8MYJ7 566 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 M0R082 166 aa10.37□□□□□ -0.75
USP28-201ENST00000003302 INPPL1O15357 1258 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms