RNA–Protein interactions for RNA: ENST00000642137.1

LINC00339-213, long intergenic non-protein coding RNA 339, humanhuman

BASIC

Gene LINC00339, Length 222 nt, Biotype transcribed processed pseudogene, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-213ENST00000642137 SPHK1Q9NYA1 384 aa11.9□□□□□ -0.5
LINC00339-213ENST00000642137 FAM53CQ9NYF3 392 aa11.9□□□□□ -0.5
LINC00339-213ENST00000642137 ACTR10Q9NZ32 417 aa11.9□□□□□ -0.5
LINC00339-213ENST00000642137 GPRC5BQ9NZH0 403 aa11.9□□□□□ -0.5
LINC00339-213ENST00000642137 PCNX2A6NKB5 2137 aa11.9□□□□□ -0.5
LINC00339-213ENST00000642137 ASXL3Q9C0F0 2248 aa11.9□□□□□ -0.51
LINC00339-213ENST00000642137 UNC13CQ8NB66 2214 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 E2F3O00716 465 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 DUX1O43812 170 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 CCNT2O60583 730 aaKnown RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 SUPT7LO94864 414 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 WDR47O94967 919 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 SIX3O95343 332 aaPredicted RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 RPS17P08708 135 aaKnown RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 CDK4P11802 303 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 EEF1DP29692 281 aaKnown RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 PRDX3P30048 256 aaKnown RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 PEBP1P30086 187 aaKnown RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 CAPZBP47756 277 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 PIK3CGP48736 1102 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 ACADVLP49748 655 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 TBPL1P62380 186 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 ABATP80404 500 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 PCDH1Q08174 1060 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 TSTA3Q13630 321 aaPredicted RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 TRIP6Q15654 476 aaKnown RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 FBXO48Q5FWF7 155 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 PRAMEF13Q5VWM6 474 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 TMEM71Q6P5X7 295 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 PLXDC1Q8IUK5 500 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 TRIM42Q8IWZ5 723 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 OR6Y1Q8NGX8 325 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 FLVCR1-AS1Q8TAF5 88 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 MGARPQ8TDB4 240 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 RSC1A1Q92681 617 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 MED8Q96G25 268 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 ZDHHC12Q96GR4 267 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 CNDP1Q96KN2 507 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 OR2A14Q96R47 310 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 OR4K3Q96R72 315 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 MECRQ9BV79 373 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 GATA5Q9BWX5 397 aaPredicted RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 ABCG4Q9H172 646 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 INTS9Q9NV88 658 aaKnown RBP11.89□□□□□ -0.51
LINC00339-213ENST00000642137 OPTCQ9UBM4 332 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 PCDHGA1Q9Y5H4 931 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 KCNE2Q9Y6J6 123 aa11.89□□□□□ -0.51
LINC00339-213ENST00000642137 A0A1W2PQM1 296 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 GSAPA4D1B5 854 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 WDR91A4D1P6 747 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 LRRC14BA6NHZ5 514 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 NTN3O00634 580 aaPredicted RBP11.88□□□□□ -0.51
LINC00339-213ENST00000642137 SLC30A4O14863 429 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 CLGNO14967 610 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 CAPN5O15484 640 aaPredicted RBP11.88□□□□□ -0.51
LINC00339-213ENST00000642137 NPHS1O60500 1241 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 H2AFYO75367 372 aaKnown RBP11.88□□□□□ -0.51
LINC00339-213ENST00000642137 KATNA1O75449 491 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 CCNDBP1O95273 360 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 CPNE6O95741 557 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 C9P02748 559 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 FGF3P11487 239 aaPredicted RBP11.88□□□□□ -0.51
LINC00339-213ENST00000642137 EPB42P16452 691 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 UGT2B7P16662 529 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 HRH2P25021 359 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 CMPK1P30085 196 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 SERPINB5P36952 375 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 NAGLUP54802 743 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 CFHR1Q03591 330 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 CDC16Q13042 620 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 GTF2H2Q13888 395 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 SF1Q15637 639 aaKnown RBP11.88□□□□□ -0.51
LINC00339-213ENST00000642137 SLC5A12Q1EHB4 618 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 AMZ1Q400G9 498 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 THEMIS2Q5TEJ8 643 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 NKAIN2Q5VXU1 208 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 ICE2Q659A1 982 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 GTF2H2CQ6P1K8 395 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 SPESP1Q6UW49 350 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 USP53Q70EK8 1073 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 CARFQ8N187 725 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 TEX9Q8N6V9 391 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 FAM76AQ8TAV0 307 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 PPP4R1Q8TF05 950 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 ZNF483Q8TF39 744 aaPredicted RBP11.88□□□□□ -0.51
LINC00339-213ENST00000642137 ZUFSPQ96AP4 578 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 TMEM237Q96Q45 408 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 CD180Q99467 661 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 MLXIPLQ9NP71 852 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 PDP2Q9P2J9 529 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 TAC3Q9UHF0 121 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 PCTPQ9UKL6 214 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 DYRK1BQ9Y463 629 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 ASB1Q9Y576 335 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 ANGPTL3Q9Y5C1 460 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 MYO15AQ9UKN7 3530 aa11.88□□□□□ -0.51
LINC00339-213ENST00000642137 RFPL3O75679 317 aa11.87□□□□□ -0.51
LINC00339-213ENST00000642137 RPLP0P05388 317 aaKnown RBP11.87□□□□□ -0.51
LINC00339-213ENST00000642137 NEFHP12036 1026 aa11.87□□□□□ -0.51
LINC00339-213ENST00000642137 CEACAM1P13688 526 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms