RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SEPT11Q9NVA2 429 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 PRMT7Q9NVM4 692 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 P4HTMQ9NXG6 502 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TAS2R14Q9NYV8 317 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 EHD2Q9NZN4 543 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 LARSQ9P2J5 1176 aaKnown RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 B3GAT1Q9P2W7 334 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF107Q9UII5 783 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 DAPK2Q9UIK4 370 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 IKZF3Q9UKT9 509 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZHX1Q9UKY1 873 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 GRID1Q9ULK0 1009 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 STUB1Q9UNE7 303 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF148Q9UQR1 794 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 WDR37Q9Y2I8 494 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 PPP2R2CQ9Y2T4 447 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 GRIP1Q9Y3R0 1128 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 RIPK3Q9Y572 518 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 TRIM17Q9Y577 477 aa0.36□□□□□ -2.35
VPS35-212ENST00000640313 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP0.36□□□□□ -2.35
VPS35-212ENST00000640313 ZNF644Q9H582 1327 aaPredicted RBP0.36□□□□□ -2.35
VPS35-212ENST00000640313 HEG1Q9ULI3 1381 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 FBN3Q75N90 2809 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TDRD6O60522 2096 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 A0A087WUV0 522 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 A0A1W2PQ09 198 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 NEMP2A6NFY4 417 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GLTPD2A6NH11 291 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CASTOR2A6NHX0 329 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 LRRC72A6NJI9 287 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 C2orf81A6NN90 581 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ENO4A6NNW6 628 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MYO1GB0I1T2 1018 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PTGES3LE9PB15 166 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PI4K2BG5E9Z4 385 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TRIM77I1YAP6 450 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 K7EQD1 137 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 K7EQG2 157 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CDX4O14627 284 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 KLF11O14901 512 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 EPB41L2O43491 1005 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 XRCC3O43542 346 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 SPRY1O43609 319 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 IDH3BO43837 385 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 AHCYL1O43865 530 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ECE2O60344 883 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GLRA3O75311 464 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GPC4O75487 556 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 FOXH1O75593 365 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ATP6AP2O75787 350 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CEACAM4O75871 244 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CDK2AP2O75956 126 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 KRT33AO76009 404 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 NXPH4O95158 308 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 C22orf31O95567 290 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TRUB2O95900 331 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 BCL10O95999 233 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 IGHV2-70P01814 119 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 IGHG3P01860 377 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CSN3P07498 182 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ADRB2P07550 413 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 HOXD4P09016 255 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 HOXC4P09017 264 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 CLTBP09497 229 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GIG44P09565 113 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 RAB40ALP0C0E4 278 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 HSPA8P11142 646 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 GP9P14770 177 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MYOGP15173 224 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ATP6V1B1P15313 513 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 EPCAMP16422 314 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PORP16435 677 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 CD22P20273 847 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PAX3P23760 479 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ARL3P36405 182 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 NRIP1P48552 1158 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 ARSEP51690 589 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PDX1P52945 283 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MFAP4P55083 255 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CDH13P55290 713 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 TPD52P55327 224 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 PAX9P55771 341 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 HUNKP57058 714 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 GEMIN4P57678 1058 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 GSDMDP57764 484 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 OR1D5P58170 312 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 KRTAP12-4P60329 112 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 RPS18P62269 152 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 MC1RQ01726 317 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CDR2Q01850 454 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 EPS8Q12929 822 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 PLA2G7Q13093 441 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 DDX10Q13206 875 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 MAMLD1Q13495 774 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 BAATQ14032 418 aaPredicted RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 HNRNPDQ14103 355 aaKnown RBP0.35□□□□□ -2.35
VPS35-212ENST00000640313 IL11RAQ14626 422 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 MTF1Q14872 753 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 CRYMQ14894 314 aa0.35□□□□□ -2.35
VPS35-212ENST00000640313 EFTUD2Q15029 972 aaKnown RBP eCLIP0.35□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms