RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 CMKLR1Q99788 373 aa12.73□□□□□ -0.37
GTF3A-209ENST00000640289 TMEM109Q9BVC6 243 aa12.73□□□□□ -0.37
GTF3A-209ENST00000640289 CCDC177Q9NQR7 707 aaPredicted RBP12.73□□□□□ -0.37
GTF3A-209ENST00000640289 C1GALT1Q9NS00 363 aa12.73□□□□□ -0.37
GTF3A-209ENST00000640289 LGALS13Q9UHV8 139 aa12.73□□□□□ -0.37
GTF3A-209ENST00000640289 MSRB2Q9Y3D2 182 aa12.73□□□□□ -0.37
GTF3A-209ENST00000640289 NEUROG3Q9Y4Z2 214 aa12.73□□□□□ -0.37
GTF3A-209ENST00000640289 PCDHB11Q9Y5F2 797 aa12.73□□□□□ -0.37
GTF3A-209ENST00000640289 SUPT3HB4E1H0 165 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 PLD2O14939 933 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 TAPBPO15533 448 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 NRP2O60462 931 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 KERAO60938 352 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 SUPT3HO75486 399 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 ZBTB11O95625 1053 aaPredicted RBP12.72□□□□□ -0.37
GTF3A-209ENST00000640289 COL6A2P12110 1019 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 MTHFD2P13995 350 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 NELFEP18615 380 aaKnown RBP12.72□□□□□ -0.37
GTF3A-209ENST00000640289 MAGP20916 626 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 ETV5P41161 510 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 GDF5P43026 501 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 GABREP78334 506 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 CEP85LQ5SZL2 805 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 THEMIS2Q5TEJ8 643 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 FAM129CQ86XR2 697 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 C4orf33Q8N1A6 199 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 RIBC1Q8N443 379 aaPredicted RBP12.72□□□□□ -0.37
GTF3A-209ENST00000640289 FBXO39Q8N4B4 442 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 OR2L3Q8NG85 312 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 OR56A3Q8NH54 315 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 RHEBL1Q8TAI7 183 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 ACMSDQ8TDX5 336 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 ATL1Q8WXF7 558 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 ESAMQ96AP7 390 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 PRR11Q96HE9 360 aaPredicted RBP12.72□□□□□ -0.37
GTF3A-209ENST00000640289 SCYL1Q96KG9 808 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 TSNARE1Q96NA8 513 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 TMEM79Q9BSE2 394 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 INTS7Q9NVH2 962 aaKnown RBP12.72□□□□□ -0.37
GTF3A-209ENST00000640289 SOHLH2Q9NX45 425 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 CD274Q9NZQ7 290 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 XPR1Q9UBH6 696 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 PISDQ9UG56 409 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 SH2B3Q9UQQ2 575 aa12.72□□□□□ -0.37
GTF3A-209ENST00000640289 CNOT1A5YKK6 2376 aaKnown RBP12.72□□□□□ -0.37
GTF3A-209ENST00000640289 TRABD2BA6NFA1 517 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 SBK3P0C264 359 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 JMJD7P0C870 316 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 EBLN1P0CF75 366 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 FGF3P11487 239 aaPredicted RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 FOLR1P15328 257 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 H2AFXP16104 143 aaPredicted RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 GRIA3P42263 894 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 ARL4DP49703 201 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 MAPK10P53779 464 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 HSD11B2P80365 405 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 EIF3IQ13347 325 aaKnown RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 TSNAXIP1Q2TAA8 658 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 PTCHD3Q3KNS1 767 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 PRAMEF13Q5VWM6 474 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 ICE2Q659A1 982 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 FCRL6Q6DN72 434 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 CAPN13Q6MZZ7 669 aaPredicted RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 C16orf46Q6P387 395 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 CDHR3Q6ZTQ4 885 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 KMT5CQ86Y97 462 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 CARFQ8N187 725 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 D2HGDHQ8N465 521 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 BMPERQ8N8U9 685 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 C19orf47Q8N9M1 422 aaKnown RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 PDPRQ8NCN5 879 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 PMEPA1Q969W9 287 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 OR4K3Q96R72 315 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 CTRCQ99895 268 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 SGPP1Q9BX95 441 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 POLR1BQ9H9Y6 1135 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 APMAPQ9HDC9 416 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 FAM60AQ9NP50 221 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 SLC6A20Q9NP91 592 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 MRPS30Q9NP92 439 aaKnown RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 CUEDC1Q9NWM3 386 aaPredicted RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 SIDT1Q9NXL6 827 aaKnown RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 WWOXQ9NZC7 414 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 NUDT4Q9NZJ9 180 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 AKAP7Q9P0M2 348 aaPredicted RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 TMEM216Q9P0N5 145 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 CPSF2Q9P2I0 782 aaKnown RBP12.71□□□□□ -0.37
GTF3A-209ENST00000640289 ANGPTL2Q9UKU9 493 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 BTRCQ9Y297 605 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 ASB1Q9Y576 335 aa12.71□□□□□ -0.37
GTF3A-209ENST00000640289 PTPRBP23467 1997 aa12.7□□□□□ -0.38
GTF3A-209ENST00000640289 IGKV1-8A0A0C4DH67 115 aa12.7□□□□□ -0.38
GTF3A-209ENST00000640289 TK2O00142 265 aa12.7□□□□□ -0.38
GTF3A-209ENST00000640289 MAP2K7O14733 419 aa12.7□□□□□ -0.38
GTF3A-209ENST00000640289 HCRTR1O43613 425 aa12.7□□□□□ -0.38
GTF3A-209ENST00000640289 S100BP04271 92 aaPredicted RBP12.7□□□□□ -0.38
GTF3A-209ENST00000640289 RBP1P09455 135 aa12.7□□□□□ -0.38
GTF3A-209ENST00000640289 NPPBP16860 134 aa12.7□□□□□ -0.38
GTF3A-209ENST00000640289 KRT4P19013 534 aa12.7□□□□□ -0.38
GTF3A-209ENST00000640289 CMPK1P30085 196 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms