RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PEX13Q92968 403 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 MIEF2Q96C03 454 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 SPATA13Q96N96 652 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 SPSB2Q99619 263 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 TBL1YQ9BQ87 522 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 SELENOSQ9BQE4 189 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 PACSIN1Q9BY11 444 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 KLHL25Q9H0H3 589 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.03□□□□□ -1.448e-7■■□□□ 14.3
CUX1-220ENST00000607092 XKR8Q9H6D3 395 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 GRPEL1Q9HAV7 217 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 GPAMQ9HCL2 828 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 ZNF304Q9HCX3 659 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 FAM60AQ9NP50 221 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 NLE1Q9NVX2 485 aaPredicted RBP6.03□□□□□ -1.44
CUX1-220ENST00000607092 SEC14L3Q9UDX4 400 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 SLC39A10Q9ULF5 831 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 PCDHGB6Q9Y5F9 930 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 HS3ST3B1Q9Y662 390 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 FER1L5A0AVI2 2057 aa6.03□□□□□ -1.44
CUX1-220ENST00000607092 TRGV8A0A0C4DH27 118 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 A0A1W2PQ72 361 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 SLC5A10A0PJK1 596 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 MACROD2A1Z1Q3 448 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 VSTM2BA6NLU5 285 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ZNF839A8K0R7 811 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ERI2A8K979 691 aaKnown RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 CCL21O00585 134 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 PFDN6O15212 129 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 KCNN4O15554 427 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 RASAL1O95294 804 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 IPO7O95373 1038 aaKnown RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 RBP3P10745 1247 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ESRRAP11474 423 aaPredicted RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 PECAM1P16284 738 aaPredicted RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 MAGP20916 626 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 COMTP21964 271 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ACADLP28330 430 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 HTR1EP28566 365 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 RBL1P28749 1068 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 PKLRP30613 574 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 PTPN7P35236 360 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 CA7P43166 264 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 SF1Q15637 639 aaKnown RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 ZIC1Q15915 447 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 PARP6Q2NL67 630 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 DEFB110Q30KQ9 67 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 KRTCAP3Q53RY4 240 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ABHD17BQ5VST6 288 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 GARNL3Q5VVW2 1013 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ZNF324BQ6AW86 544 aaPredicted RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 C11orf63Q6NUN7 778 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 DARS2Q6PI48 645 aaKnown RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 LINC00696Q6ZRV3 163 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ARHGEF18Q6ZSZ5 1173 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 TRIM73Q86UV7 250 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 CPNE8Q86YQ8 564 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 SLC22A15Q8IZD6 547 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 LILRA3Q8N6C8 439 aaPredicted RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 CLDN19Q8N6F1 224 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 HORMAD2Q8N7B1 307 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 OR13C4Q8NGS5 318 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 OR2L8Q8NGY9 312 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 CHTF18Q8WVB6 975 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ANP32BQ92688 251 aaKnown RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 RAD51AP1Q96B01 352 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 CDKN2AIPNLQ96HQ2 116 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 MAGED4Q96JG8 741 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 LURAP1Q96LR2 239 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 FOPNLQ96NB1 174 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ZNF285Q96NJ3 590 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 PANX3Q96QZ0 392 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 PANX2Q96RD6 677 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 NHEJ1Q9H9Q4 299 aaPredicted RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 ZBTB20Q9HC78 741 aaPredicted RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 SLC22A11Q9NSA0 550 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 SAE1Q9UBE0 346 aaPredicted RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 C19orf25Q9UFG5 118 aaPredicted RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 TSR3Q9UJK0 312 aaKnown RBP6.02□□□□□ -1.45
CUX1-220ENST00000607092 ANAPC5Q9UJX4 755 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 C3orf18Q9UK00 162 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 RIMKLBQ9ULI2 386 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 KLK4Q9Y5K2 254 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 ALG6Q9Y672 507 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 MYO7BQ6PIF6 2116 aa6.02□□□□□ -1.45
CUX1-220ENST00000607092 IGLV3-12A0A075B6K2 115 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 HYKKA2RU49 373 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 OR5H15A6NDH6 313 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 MASP2O00187 686 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 AP3B1O00203 1094 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 RASGRF2O14827 1237 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 PRAMEF2O60811 474 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 CNOT3O75175 753 aaKnown RBP6.01□□□□□ -1.45
CUX1-220ENST00000607092 UNC5CO95185 931 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 CCNDBP1O95273 360 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 ANXA5P08758 320 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 ZGLP1P0C6A0 271 aa6.01□□□□□ -1.45
CUX1-220ENST00000607092 PKMP14618 531 aaKnown RBP6.01□□□□□ -1.45
CUX1-220ENST00000607092 POU3F2P20265 443 aaPredicted RBP6.01□□□□□ -1.45
CUX1-220ENST00000607092 FBLP22087 321 aaKnown RBP6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms