RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	FAM58BP	P0C7Q3	252 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	HTR1B	P28222	390 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	MAPK9	P45984	424 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	PFN3	P60673	137 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	RCAN2	Q14206	197 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	TGFBI	Q15582	683 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	KIF19	Q2TAC6	998 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	ZNF658B	Q4V348	819 aa	Predicted RBP	11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	USP39	Q53GS9	565 aa	Known RBP	11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	XKR7	Q5GH72	579 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	IL23R	Q5VWK5	629 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	CWF19L1	Q69YN2	538 aa	Known RBP	11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	LCN8	Q6JVE9	175 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	METTL2B	Q6P1Q9	378 aa	Known RBP	11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	BLOC1S3	Q6QNY0	202 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	RNF165	Q6ZSG1	346 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	C11orf96	Q7Z7L8	435 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	VRK3	Q8IV63	474 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC22A15	Q8IZD6	547 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	FRMD1	Q8N878	549 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	TMEM145	Q8NBT3	493 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	CADM4	Q8NFZ8	388 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	ASB11	Q8WXH4	323 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	EME1	Q96AY2	570 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	CCM2L	Q9NUG4	571 aa	Predicted RBP	11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	CD274	Q9NZQ7	290 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	ACTR3B	Q9P1U1	418 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	GULP1	Q9UBP9	304 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	PACSIN3	Q9UKS6	424 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341	OARD1	Q9Y530	152 aa		11.37	□□□□□ -0.59
VRK3-223	ENST00000601341		A0A1W2PP18	115 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341		A0A1W2PPC4	97 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341		H0Y8X5	98 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341		H3BM21	787 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	IFRD1	O00458	451 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC16A5	O15375	505 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PI15	O43692	258 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	KCNJ13	O60928	360 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PDGFB	P01127	241 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	S100B	P04271	92 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	ENO2	P09104	434 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SMIM18	P0DKX4	95 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	FCGR1A	P12314	374 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	EEF1D	P29692	281 aa	Known RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	GSTT1	P30711	240 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	HOXA6	P31267	233 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PREP	P48147	710 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC7A2	P52569	658 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	RPA4	Q13156	261 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SP140	Q13342	867 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	NFATC4	Q14934	902 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	CNPY1	Q3B7I2	92 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	INTS11	Q5TA45	600 aa	Known RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC36A4	Q6YBV0	504 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	GCNT7	Q6ZNI0	430 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	ABI3BP	Q7Z7G0	1075 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PTRH1	Q86Y79	214 aa	Known RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	GALNT13	Q8IUC8	556 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	OXR1	Q8N573	874 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	RNF148	Q8N7C7	305 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SPDYE1	Q8NFV5	336 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	OR56A4	Q8NGH8	313 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	ATP6V1E2	Q96A05	226 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SCARF2	Q96GP6	870 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	FOPNL	Q96NB1	174 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	ZNF382	Q96SR6	550 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SLC12A9	Q9BXP2	914 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	DPEP2	Q9H4A9	486 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	RDH14	Q9HBH5	336 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	RIC8B	Q9NVN3	520 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SPATA6	Q9NWH7	488 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	NUDT4	Q9NZJ9	180 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	ZIM2	Q9NZV7	527 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	POLG2	Q9UHN1	485 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	CA5B	Q9Y2D0	317 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PRKAB1	Q9Y478	270 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	TNPO3	Q9Y5L0	923 aa	Known RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	GPR45	Q9Y5Y3	372 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PIKFYVE	Q9Y2I7	2098 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PABPN1L	A6NDY0	278 aa	Known RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	NCF1B	A6NI72	391 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	NCF1C	A8MVU1	366 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	GFY	I3L273	518 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	GIPC1	O14908	333 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	FFAR2	O15552	330 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	GPI	P06744	558 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	NCF1	P14598	390 aa	Predicted RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PCSK2	P16519	638 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	HIST1H2AD	P20671	130 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	CYP2A7	P20853	494 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	RABIF	P47224	123 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	NR1H2	P55055	460 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	CDH13	P55290	713 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	APOF	Q13790	326 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	FXN	Q16595	210 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	SMU1	Q2TAY7	513 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PLA2G4E	Q3MJ16	856 aa		11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PDCD4	Q53EL6	469 aa	Known RBP	11.36	□□□□□ -0.59
VRK3-223	ENST00000601341	PPP4R4	Q6NUP7	873 aa		11.36	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms