RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GUCA1CO95843 209 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 SHBGP04278 402 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 C2P06681 752 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 CD1DP15813 335 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 CYP2A7P20853 494 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 ARL4DP49703 201 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 CLN3Q13286 438 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 NAE1Q13564 534 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 TSTA3Q13630 321 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 CSHL1Q14406 222 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 CEACAM20Q6UY09 585 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 SYTL1Q8IYJ3 562 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 CENPLQ8N0S6 344 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 SLC38A9Q8NBW4 561 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 ANKRD7Q92527 254 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 PYCR2Q96C36 320 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 NXNL1Q96CM4 212 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 TSPAN17Q96FV3 270 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 DCBLD2Q96PD2 775 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 FCRL4Q96PJ5 515 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 SPRTNQ9H040 489 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 PDE7BQ9NP56 450 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 SNX15Q9NRS6 342 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 ABCF3Q9NUQ8 709 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 CTNNAL1Q9UBT7 734 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 TAC3Q9UHF0 121 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 PILRAQ9UKJ1 303 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 DLGAP3O95886 979 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 MSH2P43246 934 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 MAGEA12P43365 314 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 PCBP4P57723 403 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 RAB15P59190 212 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 TUBB4BP68371 445 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 ACY1Q03154 408 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 PRDX1Q06830 199 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 ILF2Q12905 390 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 IL11RAQ14626 422 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 FBXO42Q6P3S6 717 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 PLD6Q8N2A8 252 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 KCTD4Q8WVF5 259 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 SLC22A18Q96BI1 424 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 FBXL8Q96CD0 374 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 TCTN2Q96GX1 697 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 GPR78Q96P69 363 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 OR4K3Q96R72 315 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 SGPP1Q9BX95 441 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 PARD6BQ9BYG5 372 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 ASPSCR1Q9BZE9 553 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 CHRNA10Q9GZZ6 450 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 INTS7Q9NVH2 962 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 ZNF358Q9NW07 568 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 CUEDC1Q9NWM3 386 aaPredicted RBP13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 ARL15Q9NXU5 204 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 RARRES3Q9UL19 164 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 NOVA2Q9UNW9 492 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 SSUH2Q9Y2M2 353 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 TMEM184BQ9Y519 407 aaPredicted RBP13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 PCDHB11Q9Y5F2 797 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 KLK4Q9Y5K2 254 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 CELSR3Q9NYQ7 3312 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 DMXL2Q8TDJ6 3036 aa13.66□□□□□ -0.22
SHKBP1-217ENST00000598558 TPRP12270 2363 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 A0A087WV48 116 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 FOXO6A8MYZ6 492 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 TMEM150CB9EJG8 249 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 TAPBPO15533 448 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 STK17BO94768 372 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 KIAA0754O94854 1291 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 NTRK1P04629 796 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 INHBAP08476 426 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 NPPBP16860 134 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 WT1P19544 449 aaPredicted RBP13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 CRABP2P29373 138 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 RPA3P35244 121 aaPredicted RBP13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 HSD17B2P37059 387 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 TBPL1P62380 186 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 FBXO48Q5FWF7 155 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 TMTC4Q5T4D3 741 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 TMEM164Q5U3C3 297 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 ICE2Q659A1 982 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 FRMPD2BQ6IN97 320 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 ZNF425Q6IV72 752 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 WDR93Q6P2C0 686 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 ADGRD1Q6QNK2 874 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 RAPH1Q70E73 1250 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 ISCA2Q86U28 154 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 PAQR7Q86WK9 346 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 PPP1R3BQ86XI6 285 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 MCATQ8IVS2 390 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 SPACA3Q8IXA5 215 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 RAB42Q8N4Z0 105 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 ZNF248Q8NDW4 579 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 OR56A3Q8NH54 315 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 AENQ8WTP8 325 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 NKD1Q969G9 470 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 ISL2Q96A47 359 aa13.65□□□□□ -0.22
SHKBP1-217ENST00000598558 ALKBH8Q96BT7 664 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms