RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 WASHC2DQ5SRD0 308 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 FIGLAQ6QHK4 219 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 MFSD7Q6UXD7 560 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 ARHGEF18Q6ZSZ5 1173 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 NEK10Q6ZWH5 1172 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 EID3Q8N140 333 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 DTWD1Q8N5C7 304 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 LINC01555Q8NAE3 123 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 CA5BP1Q8WTZ4 195 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 NAP1L5Q96NT1 182 aaPredicted RBP9.65□□□□□ -0.86
TRIM28-210ENST00000597618 APOL2Q9BQE5 337 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 GORASP1Q9BQQ3 440 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 ANP32EQ9BTT0 268 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 PACSIN1Q9BY11 444 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 C14orf105Q9NVL8 296 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 SMARCAL1Q9NZC9 954 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 AAR2Q9Y312 384 aaKnown RBP9.65□□□□□ -0.86
TRIM28-210ENST00000597618 PCDHGB6Q9Y5F9 930 aa9.65□□□□□ -0.86
TRIM28-210ENST00000597618 SLC5A10A0PJK1 596 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 SMTNL1A8MU46 457 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 TARM1B6A8C7 271 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 BHMG1C9JSJ3 638 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-210ENST00000597618 E9PLN8 166 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 FAM227AF5H4B4 570 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 H7C0S8 307 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 PRPF4O43172 522 aaKnown RBP eCLIP9.64□□□□□ -0.87
TRIM28-210ENST00000597618 SERPINC1P01008 464 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 CELA2AP08217 269 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 TMEM253P0C7T8 217 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 ITGAMP11215 1152 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 ABOP16442 354 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 CD9P21926 228 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 ALDH6A1Q02252 535 aaKnown RBP9.64□□□□□ -0.87
TRIM28-210ENST00000597618 MSLNQ13421 630 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-210ENST00000597618 OLIG2Q13516 323 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 NR1I3Q14994 352 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 SF1Q15637 639 aaKnown RBP9.64□□□□□ -0.87
TRIM28-210ENST00000597618 TAZQ16635 292 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 DBN1Q16643 649 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 MUM1Q2TAK8 710 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 KAZNQ674X7 775 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 PACS1Q6VY07 963 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 LAPTM4BQ86VI4 370 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 TAX1BP1Q86VP1 789 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 DCUN1D3Q8IWE4 304 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 CHDHQ8NE62 594 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-210ENST00000597618 AGAP11Q8TF27 550 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 ZUFSPQ96AP4 578 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 IQCDQ96DY2 449 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 DNAJC1Q96KC8 554 aaKnown RBP9.64□□□□□ -0.87
TRIM28-210ENST00000597618 VKORC1Q9BQB6 163 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 FERMT1Q9BQL6 677 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 BPIFA3Q9BQP9 254 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 MENTQ9BUN1 341 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 ZNF700Q9H0M5 742 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 LMBRD1Q9NUN5 540 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 STMN3Q9NZ72 180 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 COQ3Q9NZJ6 369 aa9.64□□□□□ -0.87
TRIM28-210ENST00000597618 FEZ2Q9UHY8 353 aaPredicted RBP9.64□□□□□ -0.87
TRIM28-210ENST00000597618 SNRNP200O75643 2136 aaKnown RBP9.64□□□□□ -0.87
TRIM28-210ENST00000597618 LOC102723996A0A087X1L8 192 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 RCCD1A6NED2 376 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 FOXO6A8MYZ6 492 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 F8W8V4 182 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 RASGRF2O14827 1237 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 TTI1O43156 1089 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 CTSVO60911 334 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 WISP2O76076 250 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 MED26O95402 600 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 TSPAN12O95859 305 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 HEXBP07686 556 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 PRSS56P0CW18 603 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 ERVK-10P10266 1014 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 TNNT1P13805 278 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 SLC1A1P43005 524 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 TYRO3Q06418 890 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 DSG2Q14126 1118 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 PRPSAP1Q14558 356 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 ITIH4Q14624 930 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 PCOLCEQ15113 449 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 SLC18A3Q16572 532 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 NCCRP1Q6ZVX7 275 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-210ENST00000597618 PIANPQ8IYJ0 282 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 C2orf73Q8N5S3 287 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-210ENST00000597618 OR2L8Q8NGY9 312 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 SLC35G2Q8TBE7 412 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 SDCCAG3Q96C92 435 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 LRRC45Q96CN5 670 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 HAUS1Q96CS2 278 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 MVB12AQ96EY5 273 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 PPP1R2P1Q96PQ5 205 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 TBL1YQ9BQ87 522 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 TUBB6Q9BUF5 446 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 RAB11FIP5Q9BXF6 653 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 TSPAN10Q9H1Z9 355 aaPredicted RBP9.63□□□□□ -0.87
TRIM28-210ENST00000597618 TRPC4Q9UBN4 977 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 TNFRSF10DQ9UBN6 386 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 ZC3H7BQ9UGR2 993 aaKnown RBP9.63□□□□□ -0.87
TRIM28-210ENST00000597618 CAPN11Q9UMQ6 739 aa9.63□□□□□ -0.87
TRIM28-210ENST00000597618 CDC14AQ9UNH5 594 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms