RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 MRNIPQ6NTE8 343 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 CNSTQ6PJW8 725 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 ZNF662Q6ZS27 426 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 COX15Q7KZN9 410 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 TTC29Q8NA56 475 aaPredicted RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 OR2A1Q8NGT9 310 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 MAGEC3Q8TD91 643 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 SSC4DQ8WTU2 575 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 SPSB2Q99619 263 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 MIPEPQ99797 713 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 ZBTB20Q9HC78 741 aaPredicted RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 CUEDC1Q9NWM3 386 aaPredicted RBP15.4■□□□□ 0.06
CLN3-229ENST00000567963 IL1RAPL1Q9NZN1 696 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 CDC23Q9UJX2 597 aa15.4■□□□□ 0.06
CLN3-229ENST00000567963 ICE1Q9Y2F5 2266 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 A0A1W2PPV9 198 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 TCRBV7S3A2A0A539 114 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 GOLGA8KD6RF30 607 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 GOLGA8TH3BQL2 631 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 SOCS6O14544 535 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 MATN4O95460 622 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 TPSB2P20231 275 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 FMO4P31512 558 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 OR1D4P47884 311 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 ADARP55265 1226 aaKnown RBP15.39■□□□□ 0.05
CLN3-229ENST00000567963 GBX1Q14549 363 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 TPSAB1Q15661 275 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 KCTD19Q17RG1 926 aaPredicted RBP15.39■□□□□ 0.05
CLN3-229ENST00000567963 TYSND1Q2T9J0 566 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 WASHC2DQ5SRD0 308 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 FRMPD2BQ6IN97 320 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 ZADH2Q8N4Q0 377 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 CISD2Q8N5K1 135 aaKnown RBP15.39■□□□□ 0.05
CLN3-229ENST00000567963 OTUD6BQ8N6M0 293 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 OR2L3Q8NG85 312 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 PRR7Q8TB68 274 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 TM9SF4Q92544 642 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 LPGAT1Q92604 370 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 TCF12Q99081 682 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 SLC6A20Q9NP91 592 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 ASF1BQ9NVP2 202 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 SOX13Q9UN79 622 aa15.39■□□□□ 0.05
CLN3-229ENST00000567963 PFDN6O15212 129 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 NIPSNAP2O75323 286 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 ITGA3P26006 1051 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 VSX2P58304 361 aaPredicted RBP15.38■□□□□ 0.05
CLN3-229ENST00000567963 FASTKQ14296 549 aaKnown RBP15.38■□□□□ 0.05
CLN3-229ENST00000567963 C4orf17Q53FE4 359 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 CRB2Q5IJ48 1285 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 RNF187Q5TA31 235 aaPredicted RBP15.38■□□□□ 0.05
CLN3-229ENST00000567963 PRAMEF13Q5VWM6 474 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 KIRREL2Q6UWL6 708 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 Q6ZS92 163 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 DTWD1Q8N5C7 304 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 INPP5DQ92835 1189 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 ILKAPQ9H0C8 392 aaPredicted RBP15.38■□□□□ 0.05
CLN3-229ENST00000567963 SOX17Q9H6I2 414 aaPredicted RBP15.38■□□□□ 0.05
CLN3-229ENST00000567963 HOMER3Q9NSC5 361 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 CTSFQ9UBX1 484 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 PLEKHB1Q9UF11 243 aaPredicted RBP15.38■□□□□ 0.05
CLN3-229ENST00000567963 ZC3H7BQ9UGR2 993 aaKnown RBP15.38■□□□□ 0.05
CLN3-229ENST00000567963 FBXL4Q9UKA2 621 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 NXT1Q9UKK6 140 aaKnown RBP15.38■□□□□ 0.05
CLN3-229ENST00000567963 CRYL1Q9Y2S2 319 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 HS3ST3B1Q9Y662 390 aa15.38■□□□□ 0.05
CLN3-229ENST00000567963 DOCK10Q96BY6 2186 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 SPTAN1Q13813 2472 aaKnown RBP15.37■□□□□ 0.05
CLN3-229ENST00000567963 LOC105369274A0A096LPK9 316 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 LOC102723532A0A0G2JNH3 316 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 A0A0J9YVX5 310 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 HYKKA2RU49 373 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 VSTM2BA6NLU5 285 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 H3BMM5 538 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 CEP104O60308 925 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 NRP2O60462 931 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 AVILO75366 819 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 CBX6O95503 412 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 ESR1P03372 595 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 CCDC175P0C221 793 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 CHRM3P20309 590 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 ATP5DP30049 168 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 CXCR5P32302 372 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 FBXO42Q6P3S6 717 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 SHISA6Q6ZSJ9 500 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 OR4N4Q8N0Y3 316 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 METTL27Q8N6F8 245 aaPredicted RBP15.37■□□□□ 0.05
CLN3-229ENST00000567963 TRIM58Q8NG06 486 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 FAM136AQ96C01 138 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 SEMA3GQ9NS98 782 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 SPATA7Q9P0W8 599 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 GALPQ9UBC7 116 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 MAU2Q9Y6X3 613 aa15.37■□□□□ 0.05
CLN3-229ENST00000567963 ALOX12BO75342 701 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 MED26O95402 600 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 RNF224P0DH78 156 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 OGNP20774 298 aaKnown RBP15.36■□□□□ 0.05
CLN3-229ENST00000567963 TERF1P54274 439 aa15.36■□□□□ 0.05
CLN3-229ENST00000567963 YBX1P67809 324 aaKnown RBP15.36■□□□□ 0.05
CLN3-229ENST00000567963 SARNPP82979 210 aaKnown RBP15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms