RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 MED13Q9UHV7 2174 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 ARHGEF33A8MVX0 844 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 K7EM74 188 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 PEX12O00623 359 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 DNALI1O14645 258 aaPredicted RBP16.16■□□□□ 0.18
CLK3-210ENST00000563112 SRPX2O60687 465 aaPredicted RBP16.16■□□□□ 0.18
CLK3-210ENST00000563112 PSIP1O75475 530 aaKnown RBP16.16■□□□□ 0.18
CLK3-210ENST00000563112 IGHEP01854 428 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 ENO3P13929 434 aaPredicted RBP16.16■□□□□ 0.18
CLK3-210ENST00000563112 PGAM1P18669 254 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 SLC1A2P43004 574 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 CLCN7P51798 805 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 PTK6Q13882 451 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 SLC9A5Q14940 896 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 ARHGAP19Q14CB8 494 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 FAM214AQ32MH5 1076 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 OR2A1Q8NGT9 310 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 SMPDL3AQ92484 453 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 KCNJ9Q92806 393 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 INPP5DQ92835 1189 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 PTERQ96BW5 349 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 PCDHGB7Q9Y5F8 929 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 BSNQ9UPA5 3926 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 FLNCQ14315 2725 aa16.16■□□□□ 0.18
CLK3-210ENST00000563112 FER1L5A0AVI2 2057 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 A0A1B0GX78 115 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 KRT87PA6NCN2 255 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 DSCR3O14972 297 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 VPS26AO75436 327 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 KLF7O75840 302 aaPredicted RBP16.15■□□□□ 0.18
CLK3-210ENST00000563112 TTC4O95801 387 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 MPC1LP0DKB6 136 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 PSMB5P28074 263 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 RPA3P35244 121 aaPredicted RBP16.15■□□□□ 0.18
CLK3-210ENST00000563112 VSX2P58304 361 aaPredicted RBP16.15■□□□□ 0.18
CLK3-210ENST00000563112 GNG11P61952 73 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 TSTA3Q13630 321 aaPredicted RBP16.15■□□□□ 0.18
CLK3-210ENST00000563112 ATP1A4Q13733 1029 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 PCM1Q15154 2024 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 HSP90AA5PQ58FG0 334 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 KCNMB4Q86W47 210 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 OR2Y1Q8NGV0 311 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 SLCO2A1Q92959 643 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 FER1L6-AS2Q96M78 137 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 RUNDC3BQ96NL0 473 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 NAT9Q9BTE0 207 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 IARS2Q9NSE4 1012 aaKnown RBP16.15■□□□□ 0.18
CLK3-210ENST00000563112 CUTCQ9NTM9 273 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 PCYOX1Q9UHG3 505 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 DHRS7Q9Y394 339 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 ZNF451Q9Y4E5 1061 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 KLK4Q9Y5K2 254 aa16.15■□□□□ 0.18
CLK3-210ENST00000563112 A0A0J9YVX5 310 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 A0A1W2PPV9 198 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 MYO1CO00159 1063 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 ZBTB14O43829 449 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 HAUS5O94927 633 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 SYF2O95926 243 aaKnown RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 PNLIPRP1P54315 467 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 CUL1Q13616 776 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 FASTKQ14296 549 aaKnown RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 WASHC2DQ5SRD0 308 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 UGT3A1Q6NUS8 523 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 MRPL14Q6P1L8 145 aaKnown RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 ZNF549Q6P9A3 640 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 SYDE1Q6ZW31 735 aaPredicted RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 MRGPREQ86SM8 312 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 AGGF1Q8N302 714 aaeCLIP16.14■□□□□ 0.17
CLK3-210ENST00000563112 FBXO15Q8NCQ5 510 aaPredicted RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 FKBP10Q96AY3 582 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 CAPZA3Q96KX2 299 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 ZNF285Q96NJ3 590 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 PKP4Q99569 1192 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 GPR21Q99679 349 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 EBNA1BP2Q99848 306 aaKnown RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 DPH7Q9BTV6 452 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 ACAT2Q9BWD1 397 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 MLXIPLQ9NP71 852 aa16.14■□□□□ 0.17
CLK3-210ENST00000563112 MRPS30Q9NP92 439 aaKnown RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 UTP6Q9NYH9 597 aaKnown RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 RP1L1Q8IWN7 2480 aaPredicted RBP16.14■□□□□ 0.17
CLK3-210ENST00000563112 CCDC88CQ9P219 2028 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 A6NL46 340 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 KLHL41O60662 606 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 CTSVO60911 334 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 CEACAM4O75871 244 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 CCNDBP1O95273 360 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 ALBP02768 609 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 PDGFAP04085 211 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 F7P08709 466 aaPredicted RBP16.13■□□□□ 0.17
CLK3-210ENST00000563112 ERVK-10P10266 1014 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 ERGP11308 486 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 MCM3P25205 808 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 GCGRP47871 477 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 MPP1Q00013 466 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 DHX9Q08211 1270 aaKnown RBP16.13■□□□□ 0.17
CLK3-210ENST00000563112 CRYMQ14894 314 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 BBS9Q3SYG4 887 aa16.13■□□□□ 0.17
CLK3-210ENST00000563112 SPANXN3Q5MJ09 141 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms