RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 OTOL1A6NHN0 477 aaPredicted RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 GFRA2O00451 464 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 EDF1O60869 148 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 OR2B3O76000 313 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 AP2A2O94973 939 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 PROS1P07225 676 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 IL1RNP18510 177 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 CCNA2P20248 432 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 LHCGRP22888 699 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 VARSP26640 1264 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 LEPRP48357 1165 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 HKDC1Q2TB90 917 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 GK5Q6ZS86 529 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 ADHFE1Q8IWW8 467 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 LILRA3Q8N6C8 439 aaPredicted RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 OR5M3Q8NGP4 307 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 NACC2Q96BF6 587 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 RNF145Q96MT1 663 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 NPAS2Q99743 824 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 TMCC3Q9ULS5 477 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 PLEKHM1Q9Y4G2 1056 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 LOC285095A0A1B0GVY8 99 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 AGPSO00116 658 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 ITM2AO43736 263 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 OCM2P0CE71 109 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 OCMP0CE72 109 aaPredicted RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 UROSP10746 265 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 GTF2E2P29084 291 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 COPZ1P61923 177 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 RPS13P62277 151 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 PTSQ03393 145 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 LRIT3Q3SXY7 679 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 RNF43Q68DV7 783 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 SHISA6Q6ZSJ9 500 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 CLNKQ7Z7G1 428 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 CAMKVQ8NCB2 501 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 ANKRD49Q8WVL7 239 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 SLC5A11Q8WWX8 675 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 KIAA1191Q96A73 305 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 MYLK2Q9H1R3 596 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 ARRDC1-AS1Q9H2J1 176 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 YY1AP1Q9H869 796 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 CACNA1CQ13936 2221 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 PRSS38A1L453 326 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 TMEM202A6NGA9 273 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 C2orf74A8MZ97 194 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 PCDH7O60245 1069 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 C1SP09871 688 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 MYCLP1P12525 358 aaPredicted RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 FOXN2P32314 431 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 EIF2DP41214 584 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 PNLIPRP1P54315 467 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 ADPRHP54922 357 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 HERVK_113P63132 956 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 ZXDBP98169 803 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 MTAPQ13126 283 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 HEPACAMQ14CZ8 416 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 PLEKHS1Q5SXH7 462 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 CDHR3Q6ZTQ4 885 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.98□□□□□ -0.97
VPS39-205ENST00000562258 LIX1Q8N485 282 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 RASGEF1AQ8N9B8 481 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 GFM1Q96RP9 751 aaKnown RBP8.98□□□□□ -0.97
VPS39-205ENST00000562258 ERVK-6Q9BXR3 956 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 STRADBQ9C0K7 418 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 CLEC1BQ9P126 229 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 VPS29Q9UBQ0 182 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 MAU2Q9Y6X3 613 aa8.98□□□□□ -0.97
VPS39-205ENST00000562258 A0A1B0GTW7 788 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 ANTXRLA6NF34 631 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 MYO1CO00159 1063 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 KCNH1O95259 989 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 IGLV3-25P01717 112 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 CALB2P22676 271 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 PTPN5P54829 565 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 TBPL1P62380 186 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 PPP2CBP62714 309 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 PPP2CAP67775 309 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 FAM174BQ3ZCQ3 159 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 R3HCC1LQ7Z5L2 792 aaKnown RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 OR4A15Q8NGL6 344 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 PATE1Q8WXA2 126 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 ARHGAP9Q9BRR9 750 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 OR8D2Q9GZM6 311 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 NMUR2Q9GZQ4 415 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 C3orf14Q9HBI5 128 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 PREBQ9HCU5 417 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 FAM86C1Q9NVL1 165 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 C1orf109Q9NX04 203 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 MOCS1Q9NZB8 636 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 IL37Q9NZH6 218 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 RAPGEFL1Q9UHV5 662 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 NENFQ9UMX5 172 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 ZNF232Q9UNY5 417 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 N6AMT1Q9Y5N5 214 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 PRSS21Q9Y6M0 314 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 TLR4O00206 839 aa8.97□□□□□ -0.97
VPS39-205ENST00000562258 JUNP05412 331 aaKnown RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 ATXN1LP0C7T5 689 aaKnown RBP8.97□□□□□ -0.97
VPS39-205ENST00000562258 IMPDH1P20839 514 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms