RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 RPE65Q16518 533 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 AP5B1Q2VPB7 878 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 GK5Q6ZS86 529 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 TRIM46Q7Z4K8 759 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 SPATA19Q7Z5L4 167 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 LONP2Q86WA8 852 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 RGL4Q8IZJ4 473 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 CAMKK1Q8N5S9 505 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 RP9Q8TA86 221 aaKnown RBP20.59■□□□□ 0.89
CLN3-209ENST00000561689 MENTQ9BUN1 341 aa20.59■□□□□ 0.89
CLN3-209ENST00000561689 METTL12A8MUP2 240 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 SLC28A1O00337 649 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 UGDHO60701 494 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 GPX3P22352 226 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 HNRNPH1P31943 449 aaKnown RBP20.58■□□□□ 0.89
CLN3-209ENST00000561689 ACTR1BP42025 376 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 ATP4BP51164 291 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 MNAT1P51948 309 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 ACTR1AP61163 376 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 ERVK-8P63133 956 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 CUL3Q13618 768 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 LRP8Q14114 963 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 IMPG1Q17R60 797 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 RFTN2Q52LD8 501 aaPredicted RBP20.58■□□□□ 0.89
CLN3-209ENST00000561689 CATSPEREQ5SY80 951 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 SLCO4C1Q6ZQN7 724 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 TMPRSS11BQ86T26 416 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 SLC45A3Q96JT2 553 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 ACAT2Q9BWD1 397 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 CADM1Q9BY67 442 aaKnown RBP20.58■□□□□ 0.89
CLN3-209ENST00000561689 TCEAL2Q9H3H9 227 aaPredicted RBP20.58■□□□□ 0.89
CLN3-209ENST00000561689 GPRC5BQ9NZH0 403 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 DYRK1BQ9Y463 629 aa20.58■□□□□ 0.89
CLN3-209ENST00000561689 MAOBP27338 520 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 NUDT1P36639 197 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 SLC25A3Q00325 362 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 RPL6Q02878 288 aaKnown RBP20.57■□□□□ 0.88
CLN3-209ENST00000561689 RPS6KA2Q15349 733 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 FRG2Q64ET8 278 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 MIER2Q8N344 545 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 RNF175Q8N4F7 328 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 CAMK1GQ96NX5 476 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 FRG2BQ96QU4 278 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 ACPTQ9BZG2 426 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 XKR8Q9H6D3 395 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 MRGBPQ9NV56 204 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 KLF15Q9UIH9 416 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 SPTY2D1-AS1A0A0U1RR47 76 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 K7ESF4 209 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 PI15O43692 258 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 PDGFBP01127 241 aaPredicted RBP20.57■□□□□ 0.88
CLN3-209ENST00000561689 ERGP11308 486 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 IDO1P14902 403 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 ARHGAP19Q14CB8 494 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 CYP2A13Q16696 494 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 GSTA3Q16772 222 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 PRAMEF14Q5SWL7 426 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 PRAMEF13Q5VWM6 474 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 LAYNQ6UX15 382 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 RNF165Q6ZSG1 346 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 MAGEB10Q96LZ2 347 aaPredicted RBP20.57■□□□□ 0.88
CLN3-209ENST00000561689 SDR39U1Q9NRG7 319 aaPredicted RBP20.57■□□□□ 0.88
CLN3-209ENST00000561689 AIG1Q9NVV5 245 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 GPR45Q9Y5Y3 372 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 DGKBQ9Y6T7 804 aa20.57■□□□□ 0.88
CLN3-209ENST00000561689 TRBV23OR9-2A0A075B6M9 112 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 AIM2O14862 343 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 GSC2O15499 205 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 TNFP01375 233 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 MTHFD1P11586 935 aaKnown RBP20.56■□□□□ 0.88
CLN3-209ENST00000561689 SLC2A4P14672 509 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 EZRP15311 586 aaKnown RBP20.56■□□□□ 0.88
CLN3-209ENST00000561689 CPOXP36551 454 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 YBX1P67809 324 aaKnown RBP20.56■□□□□ 0.88
CLN3-209ENST00000561689 PCDH1Q08174 1060 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 EIF2B5Q13144 721 aaKnown RBP20.56■□□□□ 0.88
CLN3-209ENST00000561689 FZD2Q14332 565 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 HERC3Q15034 1050 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 GRHL2Q6ISB3 625 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 NRROSQ86YC3 692 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 KLHDC7BQ96G42 594 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 PPP3R2Q96LZ3 170 aa20.56■□□□□ 0.88
CLN3-209ENST00000561689 TRNAU1APQ9NX07 287 aaKnown RBP20.56■□□□□ 0.88
CLN3-209ENST00000561689 C9JVG2 144 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 AXIN1O15169 862 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 CCND1P24385 295 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 CD27P26842 260 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 HSD17B2P37059 387 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 HNF4AP41235 474 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 RPL38P63173 70 aaKnown RBP20.55■□□□□ 0.88
CLN3-209ENST00000561689 ZXDAP98168 799 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 DMWDQ09019 674 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 DDX39BQ13838 428 aaKnown RBP20.55■□□□□ 0.88
CLN3-209ENST00000561689 ABRAXAS1Q6UWZ7 409 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 FUNDC1Q8IVP5 155 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 LINC01555Q8NAE3 123 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 CADM4Q8NFZ8 388 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 SLC5A11Q8WWX8 675 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 SH3KBP1Q96B97 665 aa20.55■□□□□ 0.88
CLN3-209ENST00000561689 RCN3Q96D15 328 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms