RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 BIRC2Q13490 618 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 C9orf50Q5SZB4 431 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 NOXRED1Q6NXP6 359 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 ZNF786Q8N393 782 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 FGF13Q92913 245 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 TRAPPC9Q96Q05 1148 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 ADI1Q9BV57 179 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 SERHLQ9NQF3 203 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 PAPOLBQ9NRJ5 636 aaKnown RBP10.31□□□□□ -0.76
CUX1-217ENST00000558836 THEGQ9P2T0 379 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 FBXO10Q9UK96 956 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 SH2B3Q9UQQ2 575 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 TMEM98Q9Y2Y6 226 aa10.31□□□□□ -0.76
CUX1-217ENST00000558836 TBC1D3BA6NDS4 549 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 MAGEB17A8MXT2 336 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 ZNF197O14709 1029 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 SLC9A3R1O14745 358 aaPredicted RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 ADH1CP00326 375 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 SOD1P00441 154 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 LDLRP01130 860 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 MPC1LP0DKB6 136 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 GGT1P19440 569 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 IMPA1P29218 277 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 CASP9P55211 416 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 MERTKQ12866 999 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 STARD3Q14849 445 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 ATP6AP1Q15904 470 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 CATSPEREQ5SY80 951 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 C9orf64Q5T6V5 341 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 DOK6Q6PKX4 331 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 CHST15Q7LFX5 561 aaPredicted RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 SYTL1Q8IYJ3 562 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 FAM162AQ96A26 154 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 CCM2Q9BSQ5 444 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 SLC29A3Q9BZD2 475 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 FAM192AQ9GZU8 254 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 DEC1Q9P2X7 70 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 U3KQV3 271 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 TRPM6Q9BX84 2022 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 LZTS3O60299 673 aaPredicted RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 GMNNO75496 209 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 PRKD3O94806 890 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 NPPAP01160 153 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 ANXA6P08133 673 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 GSTM1P09488 218 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 HNRNPA1P09651 372 aaKnown RBP eCLIP10.3□□□□□ -0.76
CUX1-217ENST00000558836 PABPC4LP0CB38 370 aaKnown RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 AMD1P17707 334 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 CLDN8P56748 225 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 TXNL4AP83876 142 aaKnown RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 GSTM4Q03013 218 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 GPM6BQ13491 265 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 PDE12Q6L8Q7 609 aaKnown RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 PSRC1Q6PGN9 363 aaPredicted RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 ZNF551Q7Z340 670 aaPredicted RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 TRMT11Q7Z4G4 463 aaKnown RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 PROSER1Q86XN7 944 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 NPAS3Q8IXF0 933 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 L3MBTL4Q8NA19 623 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 ZNF548Q8NEK5 533 aaPredicted RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 NETO1Q8TDF5 533 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 BPIFB1Q8TDL5 484 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 OTUB2Q96DC9 234 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 PAIP1Q9H074 479 aaKnown RBP10.3□□□□□ -0.76
CUX1-217ENST00000558836 NTN4Q9HB63 628 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 MAGEL2Q9UJ55 1249 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 PLAGL1Q9UM63 463 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 BTBD3Q9Y2F9 522 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 GON4LQ3T8J9 2241 aa10.3□□□□□ -0.76
CUX1-217ENST00000558836 ELOVL7A1L3X0 281 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 DYTNA2CJ06 578 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 H3BM21 787 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 YY2O15391 372 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 CPSF4O95639 269 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 C6P13671 934 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 JUPP14923 745 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 CALRP27797 417 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 PBX2P40425 430 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 MTHFRP42898 656 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 GPR1P46091 355 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 RPL5P46777 297 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 YAP1P46937 504 aaKnown RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 AP1S2P56377 157 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 DCDC1P59894 354 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 NFE2L1Q14494 772 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 ZNF234Q14588 700 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 RUNDC3AQ59EK9 446 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 IER5LQ5T953 404 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 TMPRSS11BQ86T26 416 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 SYT12Q8IV01 421 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 PLPP6Q8IY26 295 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 TBC1D21Q8IYX1 336 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 CLECL1Q8IZS7 167 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 TCAIMQ8N3R3 496 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 PLA2G15Q8NCC3 412 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 GLB1L3Q8NCI6 653 aaPredicted RBP10.29□□□□□ -0.76
CUX1-217ENST00000558836 TSPAN14Q8NG11 270 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 OR8J3Q8NGG0 315 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 ZFP28Q8NHY6 868 aa10.29□□□□□ -0.76
CUX1-217ENST00000558836 NEIL2Q969S2 332 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms