RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 DDX18Q9NVP1 670 aaKnown RBP7.08□□□□□ -1.28
VPS13C-206ENST00000558338 USE1Q9NZ43 259 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 B4GALT6Q9UBX8 382 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ADGRE2Q9UHX3 823 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 BLOC1S6Q9UL45 172 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 ATP11BQ9Y2G3 1177 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 NEUROG3Q9Y4Z2 214 aa7.08□□□□□ -1.28
VPS13C-206ENST00000558338 PCNTO95613 3336 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 ANKRD12Q6UB98 2062 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 EVPLLA8MZ36 301 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 G3V2T6 193 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 GFYI3L273 518 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 GNGT2O14610 69 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 PER2O15055 1255 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 MYO1DO94832 1006 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SCGB1D2O95969 90 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 PDYNP01213 254 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 GSTM1P09488 218 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 JUPP14923 745 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 MAP4P27816 1152 aaKnown RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 CTSOP43234 321 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 TRPC1P48995 793 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 HLCSP50747 726 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 CCR3P51677 355 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 RPS6KA3P51812 740 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 EPHA5P54756 1037 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 YBX1P67809 324 aaKnown RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 B4GALNT1Q00973 533 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 GSTM4Q03013 218 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 HSPA14Q0VDF9 509 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 TOP3AQ13472 1001 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 CPSF6Q16630 551 aaKnown RBP eCLIP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 TMEM95Q3KNT9 176 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 PLA2G4EQ3MJ16 856 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SGO1Q5FBB7 561 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 RBM48Q5RL73 367 aaKnown RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 LDLRAP1Q5SW96 308 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 FRG2Q64ET8 278 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 ERICH5Q6P6B1 374 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 LILRA6Q6PI73 481 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SUSD1Q6UWL2 747 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 DPY19L3Q6ZPD9 716 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 CALHM3Q86XJ0 350 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 KLHDC8AQ8IYD2 350 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 ZCCHC7Q8N3Z6 543 aaKnown RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 LILRB2Q8N423 598 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 BEND7Q8N7W2 519 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 OR10A6Q8NH74 314 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SLC22A17Q8WUG5 538 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 NCLNQ969V3 563 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 TMBIM1Q969X1 311 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 OTUB2Q96DC9 234 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 NRBF2Q96F24 287 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 REXO5Q96IC2 774 aaKnown RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 FBXL20Q96IG2 436 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 LRIG1Q96JA1 1093 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 DMRTB1Q96MA1 342 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 FRG2BQ96QU4 278 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 FAM129BQ96TA1 746 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 FAM83CQ9BQN1 747 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 HEPHQ9BQS7 1158 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 CORO1BQ9BR76 489 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 ZSCAN5AQ9BUG6 496 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SPATA9Q9BWV2 254 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 ING2Q9H160 280 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 FAM83DQ9H4H8 585 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 KAT8Q9H7Z6 458 aaKnown RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 TMEM9Q9P0T7 183 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 IFT80Q9P2H3 777 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 CLEC4EQ9ULY5 219 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SAMD4AQ9UPU9 718 aaKnown RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 PCDHGA11Q9Y5H2 935 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 ORC6Q9Y5N6 252 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 AP1M2Q9Y6Q5 423 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 V9GYQ6 96 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 PIKFYVEQ9Y2I7 2098 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 A8MX80 341 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 UPK3BL1B0FP48 263 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 UPK3BL2E5RIL1 263 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 NEDD8-MDP1E9PL57 170 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 H3BSA7 217 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SLC9A3R1O14745 358 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 KLF4O43474 513 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 BNIP3LO60238 219 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 CXCL14O95715 111 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 CST1P01037 141 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 ALPLP05186 524 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 GNAO1P09471 354 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SPATA31D3P0C874 917 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 POLR2EP19388 210 aaKnown RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 PRPS1L1P21108 318 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 XPAP23025 273 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 TPD52P55327 224 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 C21orf58P58505 322 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 GABARAPL2P60520 117 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SRSF11Q05519 484 aaKnown RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 LRRC74AQ0VAA2 488 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 IL18R1Q13478 541 aa7.07□□□□□ -1.28
VPS13C-206ENST00000558338 SIM2Q14190 667 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-206ENST00000558338 ZNF284Q2VY69 593 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms