RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 GFRA2O00451 464 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 KRT6AP02538 564 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 KRT6BP04259 564 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 PCMT1P22061 227 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 AQP1P29972 269 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 CD6P30203 668 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 IDUAP35475 653 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 OPRL1P41146 370 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 KRT6CP48668 564 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 DAPP51397 102 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 MAD2L1Q13257 205 aaPredicted RBP12.53□□□□□ -0.4
LDLR-207ENST00000558013 GBX1Q14549 363 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 Q6ZNB5 142 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 DCDC5Q6ZRR9 648 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 GAREM2Q75VX8 874 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 LILRA3Q8N6C8 439 aaPredicted RBP12.53□□□□□ -0.4
LDLR-207ENST00000558013 COPS8Q99627 209 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 REXO4Q9GZR2 422 aaKnown RBP12.53□□□□□ -0.4
LDLR-207ENST00000558013 KCNH6Q9H252 994 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 RETREG1Q9H6L5 497 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 ATP13A3Q9H7F0 1226 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 IL21Q9HBE4 155 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 RASSF1Q9NS23 344 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 THG1LQ9NWX6 298 aaKnown RBP12.53□□□□□ -0.4
LDLR-207ENST00000558013 BCKDKO14874 412 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 HPRP00739 348 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 UGT2B4P06133 528 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 RETP07949 1114 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 HOXB9P17482 250 aaPredicted RBP12.53□□□□□ -0.4
LDLR-207ENST00000558013 CD22P20273 847 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 AOAHP28039 575 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 CA8P35219 290 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 HALP42357 657 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 CD300CQ08708 224 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 MOGQ16653 247 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 ZNF691Q5VV52 312 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 CCDC81Q6ZN84 652 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 ZNF621Q6ZSS3 439 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 ZNF554Q86TJ5 538 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 CENPSQ8N2Z9 138 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 ABHD11Q8NFV4 315 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 OR5K1Q8NHB7 308 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 TMEM175Q9BSA9 504 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 ZDHHC6Q9H6R6 413 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 AASDHPPTQ9NRN7 309 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 ABCB8Q9NUT2 735 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 BACE2Q9Y5Z0 518 aa12.53□□□□□ -0.4
LDLR-207ENST00000558013 KCNE1BA0A087WTH5 132 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 CLPXO76031 633 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 CPSF4O95639 269 aaKnown RBP12.52□□□□□ -0.4
LDLR-207ENST00000558013 NSG1P42857 185 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 CTF1Q16619 201 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 PLEKHG6Q3KR16 790 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 LRIF1Q5T3J3 769 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 ATG9BQ674R7 924 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 Q6ZPB1 254 aaPredicted RBP12.52□□□□□ -0.4
LDLR-207ENST00000558013 AADATQ8N5Z0 425 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 CHST14Q8NCH0 376 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 RAB2BQ8WUD1 216 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 UBTD2Q8WUN7 234 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 MAL2Q969L2 176 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 MRPL9Q9BYD2 267 aaKnown RBP12.52□□□□□ -0.4
LDLR-207ENST00000558013 C3orf18Q9UK00 162 aa12.52□□□□□ -0.4
LDLR-207ENST00000558013 A0A096LPI6 279 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 OR2AG2A6NM03 316 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 ENGP17813 658 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 IGFBP5P24593 272 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 GABRR2P28476 465 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 CLK3P49761 638 aaKnown RBP12.52□□□□□ -0.41
LDLR-207ENST00000558013 VEPH1Q14D04 833 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 POM121L1PQ3SYA9 428 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 CCSMST1Q4G0I0 132 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 GRAMD4Q6IC98 578 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 ZNF783Q6ZMS7 281 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 B3GNT8Q7Z7M8 397 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 IGFN1Q86VF2 1251 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 SVOPLQ8N434 492 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 DDHD1Q8NEL9 900 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 OR2AP1Q8NGE2 309 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 NDNFQ8TB73 568 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 MCOLN3Q8TDD5 553 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 MUL1Q969V5 352 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 PANX1Q96RD7 426 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 SH3GL1Q99961 368 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 RAD21L1Q9H4I0 556 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 SIRT5Q9NXA8 310 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 KCTD5Q9NXV2 234 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 USE1Q9NZ43 259 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 TMEM9Q9P0T7 183 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 ZNF451Q9Y4E5 1061 aa12.52□□□□□ -0.41
LDLR-207ENST00000558013 C16orf96A6NNT2 1141 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 ERN1O75460 977 aaKnown RBP12.51□□□□□ -0.41
LDLR-207ENST00000558013 ANGPTL1O95841 491 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 SRCP12931 536 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 HLA-FP30511 346 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 CYP2A13Q16696 494 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 ASTLQ6HA08 431 aaPredicted RBP12.51□□□□□ -0.41
LDLR-207ENST00000558013 NOXRED1Q6NXP6 359 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 DPY19L3Q6ZPD9 716 aa12.51□□□□□ -0.41
LDLR-207ENST00000558013 CYP2U1Q7Z449 544 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms