RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ATG10Q9H0Y0 220 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 HEBP1Q9NRV9 189 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 KRT84Q9NSB2 600 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 DDX28Q9NUL7 540 aaKnown RBP12.02□□□□□ -0.48
LDLR-205ENST00000557933 UBA2Q9UBT2 640 aaPredicted RBP12.02□□□□□ -0.48
LDLR-205ENST00000557933 PPT2Q9UMR5 302 aa12.02□□□□□ -0.48
LDLR-205ENST00000557933 RALGAPA2Q2PPJ7 1873 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 PNMA8CA0A1B0GUJ8 204 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 PFDN6O15212 129 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 AIREO43918 545 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 DUSP11O75319 330 aaKnown RBP12.02□□□□□ -0.49
LDLR-205ENST00000557933 AKR1A1P14550 325 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 HOXD10P28358 340 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 TRPC1P48995 793 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 ACVR1Q04771 509 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 RSBN1Q5VWQ0 802 aaPredicted RBP12.02□□□□□ -0.49
LDLR-205ENST00000557933 MFSD14CQ5VZR4 134 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 LRRC66Q68CR7 880 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.02□□□□□ -0.49
LDLR-205ENST00000557933 RFLNAQ6ZTI6 216 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 LYSMD2Q8IV50 215 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 GOLM1Q8NBJ4 401 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 NECTIN4Q96NY8 510 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 CENPOQ9BU64 300 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 PRRG3Q9BZD7 231 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 PALMDQ9NP74 551 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 C1orf109Q9NX04 203 aa12.02□□□□□ -0.49
LDLR-205ENST00000557933 ANKRD66B4E2M5 251 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 F5H5T6 163 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 STX16O14662 325 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 PRAMEF1O95521 474 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 GBAP04062 536 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 CST5P28325 142 aaPredicted RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 HOXA9P31269 272 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 CLCN7P51798 805 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 ARHGEF6Q15052 776 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 PCBP1Q15365 356 aaKnown RBP eCLIP12.01□□□□□ -0.49
LDLR-205ENST00000557933 RSPO2Q6UXX9 243 aaPredicted RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 AKAP14Q86UN6 197 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 ARMC8Q8IUR7 673 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 SCAIQ8N9R8 606 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 APIPQ96GX9 242 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 ZNF641Q96N77 438 aaPredicted RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 TTPALQ9BTX7 342 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 ACPTQ9BZG2 426 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 TRIT1Q9H3H1 467 aaKnown RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 MUC13Q9H3R2 512 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 TPK1Q9H3S4 243 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 RLIMQ9NVW2 624 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 OPTCQ9UBM4 332 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 GREB1Q4ZG55 1949 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 IFRD1O00458 451 aaPredicted RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 PDYNP01213 254 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 RPLP2P05387 115 aaKnown RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 BMPR1AP36894 532 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 GNPDA1P46926 289 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 RPP38P78345 283 aaKnown RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 IFITM2Q01629 132 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 ILF2Q12905 390 aaKnown RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 TUSC3Q13454 348 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 TSTA3Q13630 321 aaPredicted RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 TAB1Q15750 504 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 CTXN3Q4LDR2 81 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 AGAP7PQ5VUJ5 663 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 SERPINA9Q86WD7 417 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 GPR150Q8NGU9 434 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 SELENOMQ8WWX9 145 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 PYURFQ96I23 114 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 KATNAL1Q9BW62 490 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 RNF186Q9NXI6 227 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 SCN3BQ9NY72 215 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 GABRQQ9UN88 632 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 ARIH1Q9Y4X5 557 aaPredicted RBP12.01□□□□□ -0.49
LDLR-205ENST00000557933 TRPV2Q9Y5S1 764 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 SCN10AQ9Y5Y9 1956 aa12.01□□□□□ -0.49
LDLR-205ENST00000557933 FAM227AF5H4B4 570 aa12□□□□□ -0.49
LDLR-205ENST00000557933 RFXANKO14593 260 aa12□□□□□ -0.49
LDLR-205ENST00000557933 CTDSP2O14595 271 aa12□□□□□ -0.49
LDLR-205ENST00000557933 RAD51BO15315 384 aa12□□□□□ -0.49
LDLR-205ENST00000557933 RGS5O15539 181 aa12□□□□□ -0.49
LDLR-205ENST00000557933 TLL1O43897 1013 aa12□□□□□ -0.49
LDLR-205ENST00000557933 AOC2O75106 756 aa12□□□□□ -0.49
LDLR-205ENST00000557933 MSH3P20585 1137 aa12□□□□□ -0.49
LDLR-205ENST00000557933 S100A3P33764 101 aa12□□□□□ -0.49
LDLR-205ENST00000557933 HSPA14Q0VDF9 509 aa12□□□□□ -0.49
LDLR-205ENST00000557933 DOC2BQ14184 412 aa12□□□□□ -0.49
LDLR-205ENST00000557933 LRIT3Q3SXY7 679 aa12□□□□□ -0.49
LDLR-205ENST00000557933 NXNL2Q5VZ03 156 aa12□□□□□ -0.49
LDLR-205ENST00000557933 DOCK4Q8N1I0 1966 aa12□□□□□ -0.49
LDLR-205ENST00000557933 PJA1Q8NG27 643 aa12□□□□□ -0.49
LDLR-205ENST00000557933 MTERF1Q99551 399 aaKnown RBP12□□□□□ -0.49
LDLR-205ENST00000557933 ASB8Q9H765 288 aa12□□□□□ -0.49
LDLR-205ENST00000557933 SPATA7Q9P0W8 599 aa12□□□□□ -0.49
LDLR-205ENST00000557933 CCDC88CQ9P219 2028 aa12□□□□□ -0.49
LDLR-205ENST00000557933 B3GNT3Q9Y2A9 372 aa12□□□□□ -0.49
LDLR-205ENST00000557933 SLC22A1O15245 554 aa12□□□□□ -0.49
LDLR-205ENST00000557933 WBP4O75554 376 aaKnown RBP12□□□□□ -0.49
LDLR-205ENST00000557933 OTCP00480 354 aa12□□□□□ -0.49
LDLR-205ENST00000557933 STSP08842 583 aa12□□□□□ -0.49
LDLR-205ENST00000557933 MZF1P28698 734 aaPredicted RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms