RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 ZNF18P17022 549 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 POLR2CP19387 275 aaPredicted RBP5.46□□□□□ -1.54
SCFD1-208ENST00000553278 PROZP22891 400 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 AMTP48728 403 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 PTH2RP49190 550 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 CLDN15P56746 228 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 SRSF1Q07955 248 aaKnown RBP eCLIP5.46□□□□□ -1.54
SCFD1-208ENST00000553278 IL10RBQ08334 325 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 LCP2Q13094 533 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 PRKAA1Q13131 559 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 KARSQ15046 597 aaKnown RBP5.46□□□□□ -1.54
SCFD1-208ENST00000553278 ACKR1Q16570 336 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 RBBP7Q16576 425 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 TAF1BQ53T94 588 aaPredicted RBP5.46□□□□□ -1.54
SCFD1-208ENST00000553278 FAM69BQ5VUD6 431 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 FAM166AQ6J272 317 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 SLC18B1Q6NT16 456 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 PLXDC2Q6UX71 529 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 LINGO4Q6UY18 593 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 PLEKHM3Q6ZWE6 761 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 ADAMTSL2Q86TH1 951 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 FBXW8Q8N3Y1 598 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 CPSF7Q8N684 471 aaKnown RBP5.46□□□□□ -1.54
SCFD1-208ENST00000553278 GMCL1P1Q8NEA9 526 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 TMEM185AQ8NFB2 350 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 SLC24A4Q8NFF2 622 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 SPATA18Q8TC71 538 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 ZNF606Q8WXB4 792 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 FIG4Q92562 907 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 LINGO1Q96FE5 620 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 RASL10BQ96S79 203 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 DDX50Q9BQ39 737 aaKnown RBP5.46□□□□□ -1.54
SCFD1-208ENST00000553278 QTRT1Q9BXR0 403 aaKnown RBP5.46□□□□□ -1.54
SCFD1-208ENST00000553278 CARD9Q9H257 536 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 Q9H8V8 135 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 GPR173Q9NS66 373 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 PKD2L2Q9NZM6 624 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 C1RLQ9NZP8 487 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 AGO1Q9UL18 857 aaKnown RBP5.46□□□□□ -1.54
SCFD1-208ENST00000553278 KCNJ14Q9UNX9 436 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 WDR83OSQ9Y284 106 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 PLEKHA6Q9Y2H5 1048 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 TMED3Q9Y3Q3 217 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 KIF3AQ9Y496 699 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 PCDHAC2Q9Y5I4 1007 aa5.46□□□□□ -1.54
SCFD1-208ENST00000553278 A0A087X0K7 114 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 RPS10-NUDT3A0A1W2PQS6 291 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 CASTOR2A6NHX0 329 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 BECN2A8MW95 431 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 PRSS46E5RG02 174 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 SPRY3O43610 288 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 SERPINI2O75830 405 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 SYF2O95926 243 aaKnown RBP5.45□□□□□ -1.54
SCFD1-208ENST00000553278 CSF2RAP15509 400 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 UGT1A6P19224 532 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 S1PR1P21453 382 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 LMO1P25800 156 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 MAGEA4P43358 317 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 HNRNPFP52597 415 aaKnown RBP5.45□□□□□ -1.54
SCFD1-208ENST00000553278 GCNT1Q02742 428 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 NONOQ15233 471 aaKnown RBP eCLIP5.45□□□□□ -1.54
SCFD1-208ENST00000553278 OASLQ15646 514 aaKnown RBP5.45□□□□□ -1.54
SCFD1-208ENST00000553278 CA9Q16790 459 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 C10orf25Q5T742 122 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 SUSD4Q5VX71 490 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 RAET1GQ6H3X3 334 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 B3GLCTQ6Y288 498 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 WDR88Q6ZMY6 472 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 MEX3BQ6ZN04 569 aaKnown RBP5.45□□□□□ -1.54
SCFD1-208ENST00000553278 MACC1Q6ZN28 852 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 SYVN1Q86TM6 617 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 ASPGQ86U10 573 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 PTOV1Q86YD1 416 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 RNF113BQ8IZP6 322 aaKnown RBP5.45□□□□□ -1.54
SCFD1-208ENST00000553278 L3MBTL4Q8NA19 623 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 NPEPL1Q8NDH3 523 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 OR4K1Q8NGD4 311 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 TMEM255BQ8WV15 326 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 WASF1Q92558 559 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 FAM46BQ96A09 425 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 MTBPQ96DY7 904 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 URB1-AS1Q96HZ7 61 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 FAM71F1Q96KD3 344 aaPredicted RBP5.45□□□□□ -1.54
SCFD1-208ENST00000553278 CSF3RQ99062 836 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 ZNF577Q9BSK1 485 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 PRSS22Q9GZN4 317 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 VN1R1Q9GZP7 353 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 RAB17Q9H0T7 212 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 RAB9BQ9NP90 201 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 ANKMY1Q9P2S6 941 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 FZD10Q9ULW2 581 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 ZNF510Q9Y2H8 683 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 HS3ST3B1Q9Y662 390 aa5.45□□□□□ -1.54
SCFD1-208ENST00000553278 F8VVB4 439 aa5.44□□□□□ -1.54
SCFD1-208ENST00000553278 F8VWA3 439 aa5.44□□□□□ -1.54
SCFD1-208ENST00000553278 H0YIG0 161 aa5.44□□□□□ -1.54
SCFD1-208ENST00000553278 RNASEH1O60930 286 aaKnown RBP5.44□□□□□ -1.54
SCFD1-208ENST00000553278 ATP6V1G1O75348 118 aa5.44□□□□□ -1.54
SCFD1-208ENST00000553278 WISP2O76076 250 aa5.44□□□□□ -1.54
SCFD1-208ENST00000553278 DIRAS3O95661 229 aa5.44□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms