RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 KCNAB3O43448 404 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 SIX3O95343 332 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-205ENST00000550592 TCEA1P23193 301 aaKnown RBP4.58□□□□□ -1.68
LIMA1-205ENST00000550592 CDC25CP30307 473 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 HOXA1P49639 335 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-205ENST00000550592 THOP1P52888 689 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 MAT1AQ00266 395 aaKnown RBP4.58□□□□□ -1.68
LIMA1-205ENST00000550592 MBTD1Q05BQ5 628 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 IZUMO4Q1ZYL8 232 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 ZNF585BQ52M93 769 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 PDSS1Q5T2R2 415 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 MFSD12Q6NUT3 480 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 PPP1R21Q6ZMI0 780 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 ZNF852Q6ZMS4 543 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 OR8H3Q8N146 312 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 ARHGAP24Q8N264 748 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 GOT1L1Q8NHS2 421 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-205ENST00000550592 SECTM1Q8WVN6 248 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 SSMEM1Q8WWF3 244 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 DHX58Q96C10 678 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 RMDN2Q96LZ7 410 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 CPNE1Q99829 537 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 MGME1Q9BQP7 344 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 FZD8Q9H461 694 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 TCF7L2Q9NQB0 619 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 SERINC1Q9NRX5 453 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 ABCF3Q9NUQ8 709 aa4.58□□□□□ -1.68
LIMA1-205ENST00000550592 ZNF701Q9NV72 531 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-205ENST00000550592 TRIP12Q14669 1992 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-205ENST00000550592 VIRMAQ69YN4 1812 aaKnown RBP4.58□□□□□ -1.68
LIMA1-205ENST00000550592 ALS2Q96Q42 1657 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 CPDO75976 1380 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 ABCC11Q96J66 1382 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 PLEKHH1Q9ULM0 1364 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 RPGRIP1LQ68CZ1 1315 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 CASP8AP2Q9UKL3 1982 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 A0A0G2JLW4 131 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 A0A1B0GUV1 79 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 DENND3A2RUS2 1198 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 SMTNL1A8MU46 457 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 E9PI62 339 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 CLIC2O15247 247 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 SYNCRIPO60506 623 aaKnown RBP4.57□□□□□ -1.68
LIMA1-205ENST00000550592 RNASEH1O60930 286 aaKnown RBP4.57□□□□□ -1.68
LIMA1-205ENST00000550592 DGKAP23743 735 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 PSMA3P25788 255 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 LHX1P48742 406 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 MAPK12P53778 367 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 RPS18P62269 152 aaKnown RBP4.57□□□□□ -1.68
LIMA1-205ENST00000550592 KRT83P78385 493 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 ASIC2Q16515 512 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 SYT14P1Q58G82 188 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 SIRPB2Q5JXA9 342 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 C1QTNF12Q5T7M4 302 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 CAVIN1Q6NZI2 390 aaKnown RBP4.57□□□□□ -1.68
LIMA1-205ENST00000550592 PET117Q6UWS5 81 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 FOXL2NBQ6ZUU3 175 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 SLC9B2Q86UD5 537 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 METTL27Q8N6F8 245 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-205ENST00000550592 ZNF611Q8N823 705 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 TRIML1Q8N9V2 468 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 OR13J1Q8NGT2 312 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 FGFBP3Q8TAT2 258 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 SPATA20Q8TB22 786 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 MOB3AQ96BX8 217 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 SCRN2Q96FV2 425 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 PKP4Q99569 1192 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 OLFML3Q9NRN5 406 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 SLC38A7Q9NVC3 462 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 CHCHD3Q9NX63 227 aaKnown RBP4.57□□□□□ -1.68
LIMA1-205ENST00000550592 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.57□□□□□ -1.68
LIMA1-205ENST00000550592 CPSF3Q9UKF6 684 aaKnown RBP4.57□□□□□ -1.68
LIMA1-205ENST00000550592 RNF150Q9ULK6 438 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 AKAP12Q02952 1782 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 LRRC37A3O60309 1634 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 CLTCL1P53675 1640 aa4.57□□□□□ -1.68
LIMA1-205ENST00000550592 PCDH11YQ9BZA8 1340 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 TRPM3Q9HCF6 1732 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-205ENST00000550592 IGKV2D-30A0A075B6S6 120 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 HSP90AB1P08238 724 aaKnown RBP4.56□□□□□ -1.68
LIMA1-205ENST00000550592 CD22P20273 847 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 PTPN3P26045 913 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 FMO5P49326 533 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 CAPZA1P52907 286 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 NAGLUP54802 743 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 CX3CL1P78423 397 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 CAPRIN2Q6IMN6 1127 aaKnown RBP4.56□□□□□ -1.68
LIMA1-205ENST00000550592 NUP54Q7Z3B4 507 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 DNAJB7Q7Z6W7 309 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-205ENST00000550592 ABI3BPQ7Z7G0 1075 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 TLK2Q86UE8 772 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 NUDT13Q86X67 352 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 POC1AQ8NBT0 407 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 NPEPL1Q8NDH3 523 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 SYN2Q92777 582 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-205ENST00000550592 CD101Q93033 1021 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 OTUB1Q96FW1 271 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-205ENST00000550592 CITED2Q99967 270 aaPredicted RBP4.56□□□□□ -1.68
LIMA1-205ENST00000550592 FERMT1Q9BQL6 677 aa4.56□□□□□ -1.68
LIMA1-205ENST00000550592 KRTAP9-8Q9BYQ0 159 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms