RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 NAA25Q14CX7 972 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 OASLQ15646 514 aaKnown RBP12.3□□□□□ -0.44
PTCH1-218ENST00000548945 RBBP7Q16576 425 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 RPUSD3Q6P087 351 aaKnown RBP12.3□□□□□ -0.44
PTCH1-218ENST00000548945 PRMT9Q6P2P2 845 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 ISLR2Q6UXK2 745 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 RAD9BQ6WBX8 426 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 PPP1R21Q6ZMI0 780 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 TXLNBQ8N3L3 684 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 MPP5Q8N3R9 675 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 RAB42Q8N4Z0 105 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 SPC24Q8NBT2 197 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 OR11G2Q8NGC1 345 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 CFAP61Q8NHU2 1237 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 GSDMBQ8TAX9 411 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 GRHL3Q8TE85 626 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 FAR1Q8WVX9 515 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 RAD51AP1Q96B01 352 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 TRIM44Q96DX7 344 aaPredicted RBP12.3□□□□□ -0.44
PTCH1-218ENST00000548945 HES6Q96HZ4 224 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 ZNF778Q96MU6 729 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 PANX3Q96QZ0 392 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 LMF1Q96S06 567 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 ETNK1Q9HBU6 452 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 CTSFQ9UBX1 484 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 ANAPC5Q9UJX4 755 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 TCAF1Q9Y4C2 921 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 CSAG2Q9Y5P2 127 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 FAM169AQ9Y6X4 670 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 POLQO75417 2590 aa12.3□□□□□ -0.44
PTCH1-218ENST00000548945 PKDREJQ9NTG1 2253 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 TCRBV7S2A1N4TA0A589 114 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 E7EVH7 732 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 CTSVO60911 334 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 HPP00738 406 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 MCM3P25205 808 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 CCNFP41002 786 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 GRIA3P42263 894 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 CDC16Q13042 620 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 MFAP5Q13361 173 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 SEMA3AQ14563 771 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 KIAA1328Q86T90 577 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 LRRC6Q86X45 466 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 TAB3Q8N5C8 712 aaPredicted RBP12.29□□□□□ -0.44
PTCH1-218ENST00000548945 C2orf73Q8N5S3 287 aaPredicted RBP12.29□□□□□ -0.44
PTCH1-218ENST00000548945 ACRBPQ8NEB7 543 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 LKAAEAR1Q8TD35 194 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.29□□□□□ -0.44
PTCH1-218ENST00000548945 IL17FQ96PD4 163 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 SLX1AQ9BQ83 275 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 TRIM56Q9BRZ2 755 aaKnown RBP12.29□□□□□ -0.44
PTCH1-218ENST00000548945 SOX17Q9H6I2 414 aaPredicted RBP12.29□□□□□ -0.44
PTCH1-218ENST00000548945 ZNF304Q9HCX3 659 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 CATSPERZQ9NTU4 200 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 GNPTGQ9UJJ9 305 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 PACSIN2Q9UNF0 486 aaPredicted RBP12.29□□□□□ -0.44
PTCH1-218ENST00000548945 CPAMD8Q8IZJ3 1885 aa12.29□□□□□ -0.44
PTCH1-218ENST00000548945 SCN2AQ99250 2005 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 IGLV3-12A0A075B6K2 115 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 A0A1W2PQ72 361 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 HYKKA2RU49 373 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 IQCF5A8MTL0 148 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 LRRTM2O43300 516 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 LIASO43766 372 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 ALOX12BO75342 701 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 USP1O94782 785 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 C1orf105O95561 183 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 ACPPP15309 386 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 FDXRP22570 491 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 RPS3P23396 243 aaKnown RBP eCLIP12.28□□□□□ -0.44
PTCH1-218ENST00000548945 OR1D4P47884 311 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 EMP3P54852 163 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 VSX2P58304 361 aaPredicted RBP12.28□□□□□ -0.44
PTCH1-218ENST00000548945 OCA2Q04671 838 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 KLC1Q07866 573 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 KIF5AQ12840 1032 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 WASHC2DQ5SRD0 308 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 PTRHD1Q6GMV3 140 aaKnown RBP12.28□□□□□ -0.44
PTCH1-218ENST00000548945 FAM180AQ6UWF9 173 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 RNF44Q7L0R7 432 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 TAX1BP1Q86VP1 789 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 PARP9Q8IXQ6 854 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 PPHLN1Q8NEY8 458 aaKnown RBP12.28□□□□□ -0.44
PTCH1-218ENST00000548945 OR2L3Q8NG85 312 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 STT3BQ8TCJ2 826 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 MAGEC3Q8TD91 643 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 ATG4AQ8WYN0 398 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 THOC3Q96J01 351 aaKnown RBP12.28□□□□□ -0.44
PTCH1-218ENST00000548945 FOPNLQ96NB1 174 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 CRB3Q9BUF7 120 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 P2RY12Q9H244 342 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 ZNF282Q9UDV7 671 aaPredicted RBP12.28□□□□□ -0.44
PTCH1-218ENST00000548945 OSGIN2Q9Y236 505 aa12.28□□□□□ -0.44
PTCH1-218ENST00000548945 A0A1B0GUH1 482 aa12.27□□□□□ -0.45
PTCH1-218ENST00000548945 MAP2K7O14733 419 aa12.27□□□□□ -0.45
PTCH1-218ENST00000548945 PCDH17O14917 1159 aa12.27□□□□□ -0.45
PTCH1-218ENST00000548945 CD3EAPO15446 510 aaKnown RBP12.27□□□□□ -0.45
PTCH1-218ENST00000548945 PHF2O75151 1096 aa12.27□□□□□ -0.45
PTCH1-218ENST00000548945 FTCDO95954 541 aa12.27□□□□□ -0.45
PTCH1-218ENST00000548945 IFNB1P01574 187 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms