RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 BPIFA3Q9BQP9 254 aa12.16□□□□□ -0.46
SCAF11-208ENST00000546534 C10orf88Q9H8K7 445 aa12.16□□□□□ -0.46
SCAF11-208ENST00000546534 ZNF304Q9HCX3 659 aa12.16□□□□□ -0.46
SCAF11-208ENST00000546534 ENAMQ9NRM1 1142 aa12.16□□□□□ -0.46
SCAF11-208ENST00000546534 DDX56Q9NY93 547 aaKnown RBP12.16□□□□□ -0.46
SCAF11-208ENST00000546534 SMARCAL1Q9NZC9 954 aa12.16□□□□□ -0.46
SCAF11-208ENST00000546534 CAPN11Q9UMQ6 739 aa12.16□□□□□ -0.46
SCAF11-208ENST00000546534 HYOU1Q9Y4L1 999 aa12.16□□□□□ -0.46
SCAF11-208ENST00000546534 PRSS21Q9Y6M0 314 aa12.16□□□□□ -0.46
SCAF11-208ENST00000546534 SLC5A10A0PJK1 596 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 FITM1A5D6W6 292 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 PRAMEF2O60811 474 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 SNRNP200O75643 2136 aaKnown RBP12.15□□□□□ -0.46
SCAF11-208ENST00000546534 WFS1O76024 890 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 NADKO95544 446 aaPredicted RBP12.15□□□□□ -0.46
SCAF11-208ENST00000546534 UQCRHP07919 91 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 CELA2AP08217 269 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 TMEM253P0C7T8 217 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 CD1EP15812 388 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 HOXB4P17483 251 aaPredicted RBP12.15□□□□□ -0.46
SCAF11-208ENST00000546534 PKLRP30613 574 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 RAB28P51157 221 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 VSX2P58304 361 aaPredicted RBP12.15□□□□□ -0.46
SCAF11-208ENST00000546534 FAM214AQ32MH5 1076 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 TFDP3Q5H9I0 405 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 WASHC2DQ5SRD0 308 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 DENND5AQ6IQ26 1287 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 CNSTQ6PJW8 725 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 ARHGEF18Q6ZSZ5 1173 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 NCCRP1Q6ZVX7 275 aaPredicted RBP12.15□□□□□ -0.46
SCAF11-208ENST00000546534 AMER2Q8N7J2 671 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 SELENOSQ9BQE4 189 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 ENKD1Q9H0I2 346 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 LUC7LQ9NQ29 371 aaKnown RBP12.15□□□□□ -0.46
SCAF11-208ENST00000546534 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.15□□□□□ -0.46
SCAF11-208ENST00000546534 ZNF282Q9UDV7 671 aaPredicted RBP12.15□□□□□ -0.46
SCAF11-208ENST00000546534 CIDEBQ9UHD4 219 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 ZNF835Q9Y2P0 537 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 LUC7L2Q9Y383 392 aaKnown RBP12.15□□□□□ -0.46
SCAF11-208ENST00000546534 NAV3Q8IVL0 2385 aa12.15□□□□□ -0.46
SCAF11-208ENST00000546534 NCOA6Q14686 2063 aaPredicted RBP12.14□□□□□ -0.47
SCAF11-208ENST00000546534 IGHV1-45A0A0A0MS14 117 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 HACD1B0YJ81 288 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 KDM1AO60341 852 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 CTSVO60911 334 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 ITGAMP11215 1152 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 RBL1P28749 1068 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 CSNK1G2P78368 415 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 EEF1A2Q05639 463 aaKnown RBP12.14□□□□□ -0.47
SCAF11-208ENST00000546534 SLC18A3Q16572 532 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 HIBCHQ6NVY1 386 aaPredicted RBP12.14□□□□□ -0.47
SCAF11-208ENST00000546534 CLEC17AQ6ZS10 378 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 TAX1BP1Q86VP1 789 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 TMTC1Q8IUR5 882 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 ACBD4Q8NC06 268 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 SUN3Q8TAQ9 357 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 SLC22A18Q96BI1 424 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 MAGED4Q96JG8 741 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 IL17FQ96PD4 163 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 MENTQ9BUN1 341 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 RNF32Q9H0A6 362 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 STOX2Q9P2F5 926 aaPredicted RBP12.14□□□□□ -0.47
SCAF11-208ENST00000546534 MEMO1Q9Y316 297 aa12.14□□□□□ -0.47
SCAF11-208ENST00000546534 IGLV3-12A0A075B6K2 115 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 A0A1W2PQ72 361 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 HYKKA2RU49 373 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 OR5H15A6NDH6 313 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 IDSB3KWA1 339 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 H7C0S8 307 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 FTH1P02794 183 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 GYPCP04921 128 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 CD9P21926 228 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 CXCR2P25025 360 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 PSMB4P28070 264 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 EMP2P54851 167 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 CACNG1Q06432 222 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 SPARCL1Q14515 664 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 SF1Q15637 639 aaKnown RBP12.13□□□□□ -0.47
SCAF11-208ENST00000546534 SYTL3Q4VX76 610 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 ABHD17BQ5VST6 288 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 ITPRIPL1Q6GPH6 555 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 FRMPD2BQ6IN97 320 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 PRMT9Q6P2P2 845 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 MEX3BQ6ZN04 569 aaKnown RBP12.13□□□□□ -0.47
SCAF11-208ENST00000546534 Q6ZPB1 254 aaPredicted RBP12.13□□□□□ -0.47
SCAF11-208ENST00000546534 RIPOR1Q6ZS17 1223 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 SPPL2CQ8IUH8 684 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 ARNT2Q9HBZ2 717 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 GPAMQ9HCL2 828 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 PRM3Q9NNZ6 103 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 INTS7Q9NVH2 962 aaKnown RBP12.13□□□□□ -0.47
SCAF11-208ENST00000546534 RIC8BQ9NVN3 520 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 NLE1Q9NVX2 485 aaPredicted RBP12.13□□□□□ -0.47
SCAF11-208ENST00000546534 IMPACTQ9P2X3 320 aa12.13□□□□□ -0.47
SCAF11-208ENST00000546534 AAR2Q9Y312 384 aaKnown RBP12.13□□□□□ -0.47
SCAF11-208ENST00000546534 hCG_1818297A0A087WSY0 165 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 LOC105369274A0A096LPK9 316 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 LOC102723532A0A0G2JNH3 316 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 QSOX1O00391 747 aa12.12□□□□□ -0.47
SCAF11-208ENST00000546534 FFAR3O14843 346 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms