RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 DPY19L3Q6ZPD9 716 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 SPRED2Q7Z698 418 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 FAM217AQ8IXS0 508 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 EID3Q8N140 333 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 CHST14Q8NCH0 376 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 SH3YL1Q96HL8 342 aaPredicted RBP12.2□□□□□ -0.46
RNF4-222ENST00000541204 BBS2Q9BXC9 721 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 CRISPLD2Q9H0B8 497 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 INIPQ9NRY2 104 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 SAGE1Q9NXZ1 904 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 USE1Q9NZ43 259 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 KLQ9UEF7 1012 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 MBD1Q9UIS9 605 aaPredicted RBP12.2□□□□□ -0.46
RNF4-222ENST00000541204 ENPP5Q9UJA9 477 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 FBXO10Q9UK96 956 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 PCDHB1Q9Y5F3 818 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 HCFC2Q9Y5Z7 792 aa12.2□□□□□ -0.46
RNF4-222ENST00000541204 TOR1BO14657 336 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 RAD51BO15315 384 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 SERPINA1P01009 418 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 ADH1AP07327 375 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 PCMT1P22061 227 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 CDH3P22223 829 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 SPAM1P38567 509 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 CTF1Q16619 201 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 CDKN3Q16667 212 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 SUSD1Q6UWL2 747 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 NETO1Q8TDF5 533 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 MTFMTQ96DP5 389 aaKnown RBP12.19□□□□□ -0.46
RNF4-222ENST00000541204 MTG2Q9H4K7 406 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 CXXC1Q9P0U4 656 aaPredicted RBP12.19□□□□□ -0.46
RNF4-222ENST00000541204 C3orf18Q9UK00 162 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 ANGPTL3Q9Y5C1 460 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 SEC22BO75396 215 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 CREG1O75629 220 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 MSH3P20585 1137 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 LHCGRP22888 699 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 SNRPD1P62314 119 aaKnown RBP12.19□□□□□ -0.46
RNF4-222ENST00000541204 GSTM4Q03013 218 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 KCNC4Q03721 635 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 VAC14Q08AM6 782 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 SPIDRQ14159 915 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 ATP13A5Q4VNC0 1218 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 RUNDC3AQ59EK9 446 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 ZNF691Q5VV52 312 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 GALNT5Q7Z7M9 940 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 ADHFE1Q8IWW8 467 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 ZBTB2Q8N680 514 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 PDLIM5Q96HC4 596 aaKnown RBP12.19□□□□□ -0.46
RNF4-222ENST00000541204 OR52E6Q96RD3 313 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 ZNF347Q96SE7 839 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 DCAF13Q9NV06 445 aaKnown RBP12.19□□□□□ -0.46
RNF4-222ENST00000541204 AASSQ9UDR5 926 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 ZNF490Q9ULM2 529 aaPredicted RBP12.19□□□□□ -0.46
RNF4-222ENST00000541204 PAIP2BQ9ULR5 123 aaKnown RBP12.19□□□□□ -0.46
RNF4-222ENST00000541204 B3GNT3Q9Y2A9 372 aa12.19□□□□□ -0.46
RNF4-222ENST00000541204 MITFO75030 526 aaPredicted RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 ADAM23O75077 832 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 NDUFS2O75306 463 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 SCELO95171 688 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 RGS4P49798 205 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 IL5RAQ01344 420 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 PTSQ03393 145 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 EMX1Q04741 257 aaPredicted RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 ARHGEF7Q14155 803 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 LAPTM4AQ15012 233 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 TRIM16LQ309B1 348 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 C22orf39Q6P5X5 142 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 LILRA6Q6PI73 481 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 CCDC149Q6ZUS6 474 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 DCP2Q8IU60 420 aaKnown RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 SNX29P2Q8IUI4 249 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 MICU2Q8IYU8 434 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 RGL4Q8IZJ4 473 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 OR5K1Q8NHB7 308 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 CYB5D2Q8WUJ1 264 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 C11orf49Q9H6J7 331 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 KAT8Q9H7Z6 458 aaKnown RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 WWOXQ9NZC7 414 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 TMEFF2Q9UIK5 374 aaPredicted RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 PCDHB14Q9Y5E9 798 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 CLDN25C9JDP6 229 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 AREL1O15033 823 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 UGT2B11O75310 529 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ULK1O75385 1050 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 GLUD1P00367 558 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 IL6P05231 212 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 GSNP06396 782 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ITIH1P19827 911 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 MAGEA8P43361 318 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 MAGEA10P43363 369 aaPredicted RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 GNPDA1P46926 289 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 LSM3P62310 102 aaKnown RBP12.18□□□□□ -0.46
RNF4-222ENST00000541204 HSPA14Q0VDF9 509 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 RAPSNQ13702 412 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 CACHD1Q5VU97 1274 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 GPR149Q86SP6 731 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 ANKRD13BQ86YJ7 626 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 NXPE1Q8N323 547 aa12.18□□□□□ -0.46
RNF4-222ENST00000541204 PARP8Q8N3A8 854 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms