RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 HK3P52790 923 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 KDM4DQ6B0I6 523 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 CCSAPQ6IQ19 270 aaPredicted RBP12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 ALKAL1Q6UXT8 129 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 TMPRSS11AQ6ZMR5 421 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 SLC46A3Q7Z3Q1 461 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 SNX20Q7Z614 316 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 BRSK1Q8TDC3 778 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 HASPINQ8TF76 798 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 DNAJB3Q8WWF6 145 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 ST6GAL2Q96JF0 529 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 LRTM1Q9HBL6 345 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 WWOXQ9NZC7 414 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 CCDC59Q9P031 241 aaKnown RBP12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 NDRG4Q9ULP0 352 aaKnown RBP12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 DUSP12Q9UNI6 340 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 ERVW-1Q9UQF0 538 aa12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 ARIH1Q9Y4X5 557 aaPredicted RBP12.52□□□□□ -0.4
SFSWAP-209ENST00000540469 PCM1Q15154 2024 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 BPTFQ12830 3046 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 PARP14Q460N5 1801 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 IQCF5A8MTL0 148 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 RFXANKO14593 260 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 IL7P13232 177 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 SUOXP51687 545 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 TIMM50Q3ZCQ8 353 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 TJAP1Q5JTD0 557 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 ENTHD1Q8IYW4 607 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 CYP4Z2PQ8N1L4 340 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 SGIP1Q9BQI5 828 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 CNPPD1Q9BV87 410 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 BPIFA1Q9NP55 256 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 FARSBQ9NSD9 589 aaKnown RBP12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 A0A0G2JMZ2 1700 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 LRRC37A2A6NM11 1700 aa12.52□□□□□ -0.41
SFSWAP-209ENST00000540469 PCP4L1A6NKN8 68 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 FAM220BPB1ANY3 271 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 GPR182O15218 404 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 WBP4O75554 376 aaKnown RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 DARSP14868 501 aaKnown RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 EFNA1P20827 205 aaPredicted RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 CYP2A7P20853 494 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 AQP1P29972 269 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 RRM2P31350 389 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 DDOSTP39656 456 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 OLR1P78380 273 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 TSTQ16762 297 aaKnown RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 RAB41Q5JT25 222 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 ATG9BQ674R7 924 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 PDE12Q6L8Q7 609 aaKnown RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 CIR1Q86X95 450 aaPredicted RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 MSRB3Q8IXL7 192 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 CAMKK1Q8N5S9 505 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 OR5H6Q8NGV6 325 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 FBLIM1Q8WUP2 373 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 CDCA5Q96FF9 252 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 SLC6A13Q9NSD5 602 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 ABCC13Q9NSE7 274 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 SPASTQ9UBP0 616 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 A3GALT2U3KPV4 340 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 CCNDBP1O95273 360 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 ATXN1LP0C7T5 689 aaKnown RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 TNFSF8P32971 234 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 GDF5P43026 501 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 MRPL19P49406 292 aaKnown RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 TBCEQ15813 527 aaPredicted RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 AFTPHQ6ULP2 937 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 GLB1L3Q8NCI6 653 aaPredicted RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 ARRDC4Q8NCT1 418 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 EXOC2Q96KP1 924 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 CCDC32Q9BV29 185 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 RAD18Q9NS91 495 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 RPS6KA6Q9UK32 745 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 TNPO3Q9Y5L0 923 aaKnown RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 LCTP09848 1927 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 MRPS14O60783 128 aaKnown RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 RAMP2O60895 175 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 KCNE1P15382 129 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 NRIP1P48552 1158 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 CSNK2BP67870 215 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 GPLD1P80108 840 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 VLDLRP98155 873 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 ST3GAL4Q11206 333 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 MSANTD2Q6P1R3 559 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 METTL23Q86XA0 190 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 ENKURQ8TC29 256 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 SPPL2AQ8TCT8 520 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 SNAPC3Q92966 411 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 RPRD1AQ96P16 312 aaPredicted RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 INPP5KQ9BT40 448 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 TXNRD2Q9NNW7 524 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 OLA1Q9NTK5 396 aaKnown RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 TMEM45AQ9NWC5 275 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 TAS2R16Q9NYV7 291 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 SBF1O95248 1867 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 ZNF646O15015 1829 aaPredicted RBP12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 COL4A5P29400 1685 aa12.51□□□□□ -0.41
SFSWAP-209ENST00000540469 C2orf81A6NN90 581 aa12.5□□□□□ -0.41
SFSWAP-209ENST00000540469 CAPN5O15484 640 aaPredicted RBP12.5□□□□□ -0.41
SFSWAP-209ENST00000540469 ERN1O75460 977 aaKnown RBP12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms