RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 HMGA1P17096 107 aaKnown RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 SLC15A1P46059 708 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 MAPKAPK2P49137 400 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 AP2S1P53680 142 aaPredicted RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 ZNF177Q13360 481 aaPredicted RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 ZNF267Q14586 743 aaPredicted RBP13.64□□□□□ -0.23
LIG1-203ENST00000536218 LRRC26Q2I0M4 334 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 SLC39A5Q6ZMH5 540 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 ZNF461Q8TAF7 563 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 NSMCE2Q96MF7 247 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 CWH43Q9H720 699 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 ABCD2Q9UBJ2 740 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 KLHL20Q9Y2M5 609 aa13.64□□□□□ -0.23
LIG1-203ENST00000536218 LOC100130705A0A1B0GUX0 176 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 PRMT5O14744 637 aaPredicted RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 PDPK1O15530 556 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 AKR7A2O43488 359 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 LDB2O43679 373 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 CYBBP04839 570 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 LCKP06239 509 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 BMP1P13497 986 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 ICAM2P13598 275 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 MSH3P20585 1137 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 HOXD9P28356 352 aaPredicted RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 FOXD4Q12950 439 aaPredicted RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 TARDBPQ13148 414 aaKnown RBP eCLIP13.63□□□□□ -0.231e-7■■■■□ 25.2
LIG1-203ENST00000536218 CES5AQ6NT32 575 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 CILP2Q8IUL8 1156 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 TRIM48Q8IWZ4 208 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 CHAC2Q8WUX2 184 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 ANKRD49Q8WVL7 239 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 AURKBQ96GD4 344 aaPredicted RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 C3orf30Q96M34 536 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 GPR78Q96P69 363 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 SLC22A12Q96S37 553 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 MBOAT4Q96T53 435 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 MMP28Q9H239 520 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 MEAF6Q9HAF1 191 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 PCDHGA10Q9Y5H3 936 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 COL4A4P53420 1690 aaPredicted RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 MYO7AQ13402 2215 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 METTL15A6NJ78 407 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 E5RI56 91 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 LOC110117498-PIK3R3F6TDL0 507 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 SHOXO15266 292 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 AIREO43918 545 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 GOT2P00505 430 aaKnown RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 KCNA5P22460 613 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 TWF1Q12792 350 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 STARD3Q14849 445 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 ACOX1Q15067 660 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 UGT3A2Q3SY77 523 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 HECTD2Q5U5R9 776 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 CLYBLQ8N0X4 340 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 LILRB1Q8NHL6 650 aaPredicted RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 FRS2Q8WU20 508 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 DEDD2Q8WXF8 326 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 METTL2AQ96IZ6 378 aaKnown RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 CEP19Q96LK0 163 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 C1QTNF7Q9BXJ2 289 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 MRM3Q9HC36 420 aaKnown RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 TMEM39AQ9NV64 488 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 ZNF639Q9UID6 485 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 U3KQV3 271 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 MYLKQ15746 1914 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 UBA6A0AVT1 1052 aaPredicted RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 MEIOCA2RUB1 952 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 GPX3P22352 226 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 CDKN2DP55273 166 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 DEFB103AP81534 67 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 POU4F1Q01851 419 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 ZNF45Q02386 682 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 TAB1Q15750 504 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 GPR158Q5T848 1215 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 RNF219Q5W0B1 726 aaPredicted RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 GALNT5Q7Z7M9 940 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 MINDY1Q8N5J2 469 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 EFHBQ8N7U6 833 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 ZNF540Q8NDQ6 660 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 C2orf15Q8WU43 125 aaKnown RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 TTC9Q92623 222 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.63□□□□□ -0.235e-11■■■■■ 94.1
LIG1-203ENST00000536218 BCL7BQ9BQE9 202 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 TTLL2Q9BWV7 592 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 AFF4Q9UHB7 1163 aaKnown RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 AGO1Q9UL18 857 aaKnown RBP13.63□□□□□ -0.23
LIG1-203ENST00000536218 YIPF1Q9Y548 306 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 SNX8Q9Y5X2 465 aa13.63□□□□□ -0.23
LIG1-203ENST00000536218 LOC285095A0A1B0GVY8 99 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 I3L521 148 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 NPHS1O60500 1241 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 MASP1P48740 699 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 SIM2Q14190 667 aaPredicted RBP13.62□□□□□ -0.23
LIG1-203ENST00000536218 C5orf22Q49AR2 442 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 PLEKHM3Q6ZWE6 761 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 CARNMT1Q8N4J0 409 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 AMER2Q8N7J2 671 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 RIPOR3Q96MK2 946 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 GON7Q9BXV9 100 aa13.62□□□□□ -0.23
LIG1-203ENST00000536218 ALG9Q9H6U8 611 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms