RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ANKRD61A6NGH8 418 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 PI4K2BG5E9Z4 385 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 H0Y626 953 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 RECQL5O94762 991 aaPredicted RBP4.1□□□□□ -1.75
CD44-223ENST00000526553 LINGO3P0C6S8 592 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 KRT5P13647 590 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 MUTP22033 750 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 DNASE1P24855 282 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 PTAFRP25105 342 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 KRT2P35908 639 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 MAZP56270 477 aaKnown RBP4.1□□□□□ -1.75
CD44-223ENST00000526553 MAT1AQ00266 395 aaKnown RBP4.1□□□□□ -1.75
CD44-223ENST00000526553 IL11RAQ14626 422 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 KRBOX4Q5JUW0 171 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 SPDYCQ5MJ68 293 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 PET117Q6UWS5 81 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 MAML2Q8IZL2 1156 aaPredicted RBP4.1□□□□□ -1.75
CD44-223ENST00000526553 MAPK1IP1LQ8NDC0 245 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 OR5AP2Q8NGF4 316 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 KIF18AQ8NI77 898 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 ATL1Q8WXF7 558 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 SFXN2Q96NB2 322 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 SEPHS2Q99611 448 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 RAD9AQ99638 391 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 CITED2Q99967 270 aaPredicted RBP4.1□□□□□ -1.75
CD44-223ENST00000526553 MIS12Q9H081 205 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 P2RY12Q9H244 342 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 OPA3Q9H6K4 179 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 ANKZF1Q9H8Y5 726 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 Q9N2K0 584 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 RNF215Q9Y6U7 377 aa4.1□□□□□ -1.75
CD44-223ENST00000526553 CACNA1FO60840 1977 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 NDUFAF8A1L188 74 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 MSGN1A6NI15 193 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 MEIS2O14770 477 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 FDPSP14324 419 aaKnown RBP4.09□□□□□ -1.75
CD44-223ENST00000526553 PFKFB1P16118 471 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 ATP5DP30049 168 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 MNDAP41218 407 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 MTHFRP42898 656 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 ZNF75DP51815 510 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 SP3Q02447 781 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 CAMK2DQ13557 499 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 ODF4Q2M2E3 257 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 PHLDA2Q53GA4 152 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 SYT14P1Q58G82 188 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 C20orf194Q5TEA3 1177 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 FAM198BQ6UWH4 519 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 FAM47EQ6ZV65 393 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 CAMKMTQ7Z624 323 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 KIRREL3Q8IZU9 778 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 TTC30BQ8N4P2 665 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 ZNF614Q8N883 585 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 OR11H4Q8NGC9 324 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 OR2T6Q8NHC8 308 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 GOT1L1Q8NHS2 421 aaPredicted RBP4.09□□□□□ -1.75
CD44-223ENST00000526553 SETD6Q8TBK2 473 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 AFAP1L1Q8TED9 768 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 SIPA1Q96FS4 1042 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 JAKMIP1Q96N16 626 aaKnown RBP4.09□□□□□ -1.75
CD44-223ENST00000526553 EGFL8Q99944 293 aa4.09□□□□□ -1.75
CD44-223ENST00000526553 NAA11Q9BSU3 229 aaPredicted RBP4.09□□□□□ -1.75
CD44-223ENST00000526553 MCRIP2Q9BUT9 160 aaKnown RBP4.09□□□□□ -1.75
CD44-223ENST00000526553 ABT1Q9ULW3 272 aaKnown RBP4.09□□□□□ -1.75
CD44-223ENST00000526553 EXOGQ9Y2C4 368 aaKnown RBP4.09□□□□□ -1.75
CD44-223ENST00000526553 EDDM13A0A1B0GTR0 161 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 URADA6NGE7 173 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 BAG2O95816 211 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 TNNT3P45378 269 aaPredicted RBP4.08□□□□□ -1.76
CD44-223ENST00000526553 SLC6A12P48065 614 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 HNRNPDQ14103 355 aaKnown RBP4.08□□□□□ -1.76
CD44-223ENST00000526553 TNIP1Q15025 636 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 CA9Q16790 459 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 HYAL4Q2M3T9 481 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 LETM2Q2VYF4 491 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 ZNF772Q68DY9 489 aaPredicted RBP4.08□□□□□ -1.76
CD44-223ENST00000526553 PRR27Q6MZM9 219 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 C11orf63Q6NUN7 778 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 DCLRE1AQ6PJP8 1040 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 TMPRSS11BQ86T26 416 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 MYPOPQ86VE0 399 aaPredicted RBP4.08□□□□□ -1.76
CD44-223ENST00000526553 IQCHQ86VS3 1027 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 RAB42Q8N4Z0 105 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 NIPA2Q8N8Q9 360 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 Q8NFD4 153 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 NXNL1Q96CM4 212 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 ZNF689Q96CS4 500 aaPredicted RBP4.08□□□□□ -1.76
CD44-223ENST00000526553 MAGED4Q96JG8 741 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 FER1L6-AS2Q96M78 137 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 ZNF830Q96NB3 372 aaPredicted RBP4.08□□□□□ -1.76
CD44-223ENST00000526553 URM1Q9BTM9 101 aaKnown RBP4.08□□□□□ -1.76
CD44-223ENST00000526553 FUCA2Q9BTY2 467 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 ANKRD2Q9GZV1 360 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 XAB2Q9HCS7 855 aaKnown RBP4.08□□□□□ -1.76
CD44-223ENST00000526553 P4HTMQ9NXG6 502 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 PADI2Q9Y2J8 665 aa4.08□□□□□ -1.76
CD44-223ENST00000526553 ZFP37Q9Y6Q3 630 aaPredicted RBP4.08□□□□□ -1.76
CD44-223ENST00000526553 A0A1W2PPQ1 181 aa4.07□□□□□ -1.76
CD44-223ENST00000526553 C2orf81A6NN90 581 aa4.07□□□□□ -1.76
CD44-223ENST00000526553 KRTAP16-1A8MUX0 517 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms