RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 C17orf53Q8N3J3 647 aaPredicted RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 ZNF713Q8N859 430 aaPredicted RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 NKAIN3Q8N8D7 197 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 PAPD5Q8NDF8 572 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 MOSPD2Q8NHP6 518 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 ZNF75CPQ92670 426 aaPredicted RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 ANKRD9Q96BM1 317 aaPredicted RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 TBC1D31Q96DN5 1066 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 MOCOSQ96EN8 888 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 NSL1Q96IY1 281 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 SH3GL3Q99963 347 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 FNDC11Q9BVV2 318 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 MAK16Q9BXY0 300 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 TSPY26PQ9H489 355 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 TBC1D17Q9HA65 648 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 CPSF2Q9P2I0 782 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 ZDHHC2Q9UIJ5 367 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 CFAP45Q9UL16 551 aa3.49□□□□□ -1.85
CD44-217ENST00000525348 EXOGQ9Y2C4 368 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 WBP11Q9Y2W2 641 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 RRP15Q9Y3B9 282 aaKnown RBP3.49□□□□□ -1.85
CD44-217ENST00000525348 KIF21BO75037 1637 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 ABCC10Q5T3U5 1492 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 H7C423 109 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 MED24O75448 989 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 TOMM70O94826 608 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 MOCS3O95396 460 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 BCL10O95999 233 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 VPREB1P12018 145 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 DPEP1P16444 411 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 TYMPP19971 482 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 CCNCP24863 283 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 OAS2P29728 719 aaKnown RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 CA8P35219 290 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 MAGEA11P43364 429 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 ARSEP51690 589 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 HSD17B7P56937 341 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 UBXN2AP68543 259 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 HNRNPDQ14103 355 aaKnown RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 WTAPQ15007 396 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 RASA2Q15283 850 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 PKN2Q16513 984 aaKnown RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 SMUG1Q53HV7 270 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 PSRC1Q6PGN9 363 aaPredicted RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 IL27RAQ6UWB1 636 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 TMPRSS11FQ6ZWK6 438 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 TMEM139Q8IV31 216 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 POC5Q8NA72 575 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 DBF4BQ8NFT6 615 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 PTPMT1Q8WUK0 201 aaPredicted RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 ANKRD49Q8WVL7 239 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 IRGQQ8WZA9 623 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 N4BP2L2Q92802 583 aaPredicted RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 SNX21Q969T3 373 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 NEK1Q96PY6 1258 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 VGLL1Q99990 258 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 CRACR2AQ9BSW2 395 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 SYT11Q9BT88 431 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 TCHPQ9BT92 498 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 LMF2Q9BU23 707 aaKnown RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 KIFC3Q9BVG8 833 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 ATP13A3Q9H7F0 1226 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 TMEM165Q9HC07 324 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 HAUS2Q9NVX0 235 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 B3GAT1Q9P2W7 334 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 ADD3Q9UEY8 706 aaKnown RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 NOSIPQ9Y314 301 aaKnown RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 V9GYY5 206 aaPredicted RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 KDRP35968 1356 aa3.48□□□□□ -1.85
CD44-217ENST00000525348 DHX29Q7Z478 1369 aaKnown RBP3.48□□□□□ -1.85
CD44-217ENST00000525348 ZNF644Q9H582 1327 aaPredicted RBP3.47□□□□□ -1.85
CD44-217ENST00000525348 PPRC1Q5VV67 1664 aaKnown RBP3.47□□□□□ -1.85
CD44-217ENST00000525348 A0A0J9YWU9 116 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 ANKUB1A6NFN9 424 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 TMEM221A6NGB7 291 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 PRAMEF11O60813 436 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 ENTPD3O75355 529 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 AVILO75366 819 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 B3GALNT1O75752 331 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 DUS4LO95620 317 aaKnown RBP3.47□□□□□ -1.85
CD44-217ENST00000525348 PRPHP41219 470 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 PRKCZQ05513 592 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 GRAPQ13588 217 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 NR1D2Q14995 579 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 TEAD2Q15562 447 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 MEA1Q16626 185 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 CTU2Q2VPK5 515 aaKnown RBP3.47□□□□□ -1.85
CD44-217ENST00000525348 ITPRIPL2Q3MIP1 535 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 IGSF11Q5DX21 431 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 XKR3Q5GH77 459 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 ARMC4Q5T2S8 1044 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 DHRS7BQ6IAN0 325 aaPredicted RBP3.47□□□□□ -1.85
CD44-217ENST00000525348 SASS6Q6UVJ0 657 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 LEKR1Q6ZMV7 388 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 C4orf50Q6ZRC1 276 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 CCDC80Q76M96 950 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 GTSCR1Q86UQ5 136 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 COMMD2Q86X83 199 aa3.47□□□□□ -1.85
CD44-217ENST00000525348 ZNF440Q8IYI8 595 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms