RNA–Protein interactions for RNA: ENST00000518569.1

VPS13B-207, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 3

Gene VPS13B, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-207ENST00000518569 ALDH8A1Q9H2A2 487 aaPredicted RBP3.31□□□□□ -1.88
VPS13B-207ENST00000518569 CHMP4BQ9H444 224 aaKnown RBP3.31□□□□□ -1.88
VPS13B-207ENST00000518569 ZNF71Q9NQZ8 489 aaPredicted RBP3.31□□□□□ -1.88
VPS13B-207ENST00000518569 INTS9Q9NV88 658 aaKnown RBP3.31□□□□□ -1.88
VPS13B-207ENST00000518569 TBC1D7Q9P0N9 293 aa3.31□□□□□ -1.88
VPS13B-207ENST00000518569 RIPK3Q9Y572 518 aa3.31□□□□□ -1.88
VPS13B-207ENST00000518569 LIPGQ9Y5X9 500 aa3.31□□□□□ -1.88
VPS13B-207ENST00000518569 STK36Q9NRP7 1315 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 PAK4O96013 591 aaPredicted RBP3.3□□□□□ -1.88
VPS13B-207ENST00000518569 NGFP01138 241 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 GP1BBP13224 206 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 CEACAM1P13688 526 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 CDH3P22223 829 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 JAK1P23458 1154 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 PSMA3P25788 255 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 MAGEA11P43364 429 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 CLDN15P56746 228 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 CDR2Q01850 454 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 TAF10Q12962 218 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 NPTX1Q15818 432 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 PHKG1Q16816 387 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 TTC31Q49AM3 519 aaPredicted RBP3.3□□□□□ -1.88
VPS13B-207ENST00000518569 GTDC1Q4AE62 458 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 SLC35D3Q5M8T2 416 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 ARHGAP11AQ6P4F7 1023 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 PSRC1Q6PGN9 363 aaPredicted RBP3.3□□□□□ -1.88
VPS13B-207ENST00000518569 TLK2Q86UE8 772 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 EID3Q8N140 333 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 RYBPQ8N488 228 aaPredicted RBP3.3□□□□□ -1.88
VPS13B-207ENST00000518569 DYRK2Q92630 601 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 EXT2Q93063 718 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 LRR1Q96L50 414 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 CFAP53Q96M91 514 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 FAM20AQ96MK3 541 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 RAB3IPQ96QF0 476 aaPredicted RBP3.3□□□□□ -1.88
VPS13B-207ENST00000518569 ASCL2Q99929 193 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 BARHL1Q9BZE3 327 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 OR2B2Q9GZK3 357 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 ANKRD2Q9GZV1 360 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 Q9H8V8 135 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 DDX43Q9NXZ2 648 aaKnown RBP3.3□□□□□ -1.88
VPS13B-207ENST00000518569 MDFICQ9P1T7 246 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 GIMAP2Q9UG22 337 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 RNF150Q9ULK6 438 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 STUB1Q9UNE7 303 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 KIF21AQ7Z4S6 1674 aa3.3□□□□□ -1.88
VPS13B-207ENST00000518569 IGHV4-4A0A075B6R2 117 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 A0A1W2PPK0 400 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 CASTOR2A6NHX0 329 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 ARPC2O15144 300 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 GLRA3O75311 464 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 KHDRBS3O75525 346 aaKnown RBP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 BAG2O95816 211 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 GPIP06744 558 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 CYP11B2P19099 503 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 PTAFRP25105 342 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 CDC25CP30307 473 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 CSTF2P33240 577 aaKnown RBP eCLIP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 HSPA4P34932 840 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 CCR10P46092 362 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 CLK1P49759 484 aaKnown RBP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 ZNF131P52739 623 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 DLK1P80370 383 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 WASHC5Q12768 1159 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 VEZF1Q14119 521 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 ZNF273Q14593 569 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 SMC1AQ14683 1233 aaKnown RBP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 XKR6Q5GH73 641 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 CCDC158Q5M9N0 1113 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 OTUD3Q5T2D3 398 aaPredicted RBP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 ZNF790Q6PG37 636 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 GSG1LQ6UXU4 331 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 CCDC73Q6ZRK6 1079 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 NOTCH2NLQ7Z3S9 236 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 SLFN11Q7Z7L1 901 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 RTN4RL2Q86UN3 420 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 CDK20Q8IZL9 346 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 LSMEM2Q8N112 164 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 WDSUB1Q8N9V3 476 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 SLC4A11Q8NBS3 891 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 DDHD1Q8NEL9 900 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 OR4K1Q8NGD4 311 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 KIF18AQ8NI77 898 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 MRPS27Q92552 414 aaKnown RBP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 OTUB1Q96FW1 271 aaPredicted RBP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 RMDN2Q96LZ7 410 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 IWS1Q96ST2 819 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 ST6GALNAC4Q9H4F1 302 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 PFDN4Q9NQP4 134 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 FAM207AQ9NSI2 230 aaPredicted RBP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 P4HTMQ9NXG6 502 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 MAN1B1Q9UKM7 699 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 WDR83OSQ9Y284 106 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 TMED3Q9Y3Q3 217 aa3.29□□□□□ -1.88
VPS13B-207ENST00000518569 THOC2Q8NI27 1593 aaKnown RBP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 TCF20Q9UGU0 1960 aaKnown RBP3.29□□□□□ -1.88
VPS13B-207ENST00000518569 A0A087WV48 116 aa3.28□□□□□ -1.88
VPS13B-207ENST00000518569 TRAV24A0A0B4J272 114 aa3.28□□□□□ -1.88
VPS13B-207ENST00000518569 MSGN1A6NI15 193 aa3.28□□□□□ -1.88
VPS13B-207ENST00000518569 ANXA2P2A6NMY6 339 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms