RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 INSCQ1MX18 579 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 GRTP1Q5TC63 336 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 CES4AQ5XG92 561 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 ALG1LQ6GMV1 187 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 NEK5Q6P3R8 708 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 ADGRD1Q6QNK2 874 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 PAQR3Q6TCH7 311 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 RPS27LQ71UM5 84 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 PEX5LQ8IYB4 626 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 FOXJ1Q92949 421 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 DEPDC7Q96QD5 511 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 EGFL8Q99944 293 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 CCDC28BQ9BUN5 200 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 RHOJQ9H4E5 214 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 SCHIP1Q9P0W5 487 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 ACOT9Q9Y305 439 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 MYLKQ15746 1914 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 ANKRD34BA5PLL1 514 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 PDZK1P1A8MUH7 402 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 TMEM233B4DJY2 109 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 E7ENX8 843 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 TK2O00142 265 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 PRMT5O14744 637 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 VPS26AO75436 327 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 S1PR4O95977 384 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 PIK3R1P27986 724 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 SERPINB9P50453 376 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 STC1P52823 247 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 RPS6KA2Q15349 733 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 HSF5Q4G112 596 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 AGKQ53H12 422 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 PIP5KL1Q5T9C9 394 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 AGBL4Q5VU57 503 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 FRA10AC1Q70Z53 315 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 SNX20Q7Z614 316 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 IGFN1Q86VF2 1251 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 CADM3Q8N126 398 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 MARVELD2Q8N4S9 558 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 LILRA3Q8N6C8 439 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 FATE1Q969F0 183 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 RSPH9Q9H1X1 276 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 EIF2B4Q9UI10 523 aaKnown RBP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 MBD1Q9UIS9 605 aaPredicted RBP8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 KCNK6Q9Y257 313 aa8.46□□□□□ -1.05
LIMCH1-209ENST00000509277 CKAP5Q14008 2032 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 POM121BA6NF01 834 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 FADS2P1A8MWK0 482 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 BTN3A1O00481 513 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 AQP9O43315 295 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 SEMA4FO95754 770 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 ALDOAP04075 364 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 ACP5P13686 325 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 PKMP14618 531 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 PRKACBP22694 351 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 CXCL12P48061 93 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 CSNK1DP48730 415 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 DHPSP49366 369 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 LIMK2P53671 638 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 NAGLUP54802 743 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 ADPRHP54922 357 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 RACK1P63244 317 aaKnown RBP8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 C1orf61Q13536 156 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 CEACAM7Q14002 265 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 SULT1C3Q6IMI6 304 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 ENPP7Q6UWV6 458 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 SLCO6A1Q86UG4 719 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 HID1Q8IV36 788 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 ALDH16A1Q8IZ83 802 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 DCBLD1Q8N8Z6 715 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 CATSPER1Q8NEC5 780 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 TMIEQ8NEW7 156 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 SLC17A9Q9BYT1 436 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 PNPLA3Q9NST1 481 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 TAS2R13Q9NYV9 303 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 C6orf203Q9P0P8 240 aaPredicted RBP8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 RNF11Q9Y3C5 154 aa8.46□□□□□ -1.06
LIMCH1-209ENST00000509277 CNOT1A5YKK6 2376 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 LRRC72A6NJI9 287 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 CAPN14A8MX76 684 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 SUPT3HB4E1H0 165 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 FAM47E-STBD1D6RA91 191 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 RAD51BO15315 384 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 CCNKO75909 580 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 NADKO95544 446 aaPredicted RBP8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 BPGMP07738 259 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 OPRL1P41146 370 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 TAS2R38P59533 333 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 PRKG2Q13237 762 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 KRT33BQ14525 404 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 RAB39AQ14964 217 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 SNAP47Q5SQN1 464 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 TMEM236Q5W0B7 351 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 STEAP4Q687X5 459 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 C16orf89Q6UX73 402 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 USP43Q70EL4 1123 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 PIWIL4Q7Z3Z4 852 aaKnown RBP8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 AKAP14Q86UN6 197 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 CFAP206Q8IYR0 622 aa8.45□□□□□ -1.06
LIMCH1-209ENST00000509277 NXPE1Q8N323 547 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms