RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 NT5DC3Q86UY8 548 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 PARGQ86W56 976 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 SLC35F3Q8IY50 421 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 KATNAL2Q8IYT4 538 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 PQLC1Q8N2U9 271 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 SLC25A41Q8N5S1 370 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 Q8N9G6 341 aaPredicted RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 LRRC57Q8N9N7 239 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 FAM46DQ8NEK8 389 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 EXD1Q8NHP7 514 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 CCL4L1Q8NHW4 92 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 TFB1MQ8WVM0 346 aaKnown RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 DPF1Q92782 380 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 P3H4Q92791 437 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 FATE1Q969F0 183 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 EID2BQ96D98 161 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 HDAC11Q96DB2 347 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 NUS1Q96E22 293 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 IMP4Q96G21 291 aaKnown RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 MARS2Q96GW9 593 aaKnown RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 FBXL20Q96IG2 436 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 ZNF830Q96NB3 372 aaPredicted RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 FCRL4Q96PJ5 515 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 MLPHQ9BV36 600 aaPredicted RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 LRRC61Q9BV99 259 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 RIOK2Q9BVS4 552 aaKnown RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 POLR1EQ9GZS1 481 aaKnown RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 ABCG4Q9H172 646 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 SLC25A51Q9H1U9 297 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 PCDH9Q9HC56 1237 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 FGF22Q9HCT0 170 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 BPIFA1Q9NP55 256 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 SPASTQ9UBP0 616 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 KLQ9UEF7 1012 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 APOBEC3BQ9UH17 382 aaKnown RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 LCMT1Q9UIC8 334 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 GPR34Q9UPC5 381 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 SHOC2Q9UQ13 582 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 NEUROG3Q9Y4Z2 214 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 PCDHA3Q9Y5H8 950 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 U3KQA8 63 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 TPRP12270 2363 aaKnown RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 GOLGA4Q13439 2230 aaKnown RBP4.49□□□□□ -1.69
NUP54-206ENST00000508465 CELSR3Q9NYQ7 3312 aa4.49□□□□□ -1.69
NUP54-206ENST00000508465 LAMA5O15230 3695 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 ACACBO00763 2458 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 A0A0J9YYE9 177 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 C1orf232A0A0U1RR37 186 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 CCDC78A2IDD5 438 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 CFAP69A5D8W1 941 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 ZNF487B1APH4 448 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 ANKRD66B4E2M5 251 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 LMO7DNF2Z398 122 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 CACNB4O00305 520 aaPredicted RBP4.48□□□□□ -1.69
NUP54-206ENST00000508465 PSTPIP1O43586 416 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 BUD23O43709 281 aaKnown RBP4.48□□□□□ -1.69
NUP54-206ENST00000508465 PRSS23O95084 383 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 IPO7O95373 1038 aaKnown RBP4.48□□□□□ -1.69
NUP54-206ENST00000508465 AGTP01019 485 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 TRBC1P01850 177 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 ATP1A1P05023 1023 aaKnown RBP4.48□□□□□ -1.69
NUP54-206ENST00000508465 IGKV2-30P06310 120 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 ALPPL2P10696 532 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 CYP2A6P11509 494 aaPredicted RBP4.48□□□□□ -1.69
NUP54-206ENST00000508465 CKMT1AP12532 417 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 TGM2P21980 687 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 SLC6A2P23975 617 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 PTPN3P26045 913 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 AK4P27144 223 aaPredicted RBP4.48□□□□□ -1.69
NUP54-206ENST00000508465 HTR1BP28222 390 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 RBL1P28749 1068 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 TRIM23P36406 574 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 GPR1P46091 355 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 GNPDA1P46926 289 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 NR2C2P49116 596 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 SPINT3P49223 89 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 STC1P52823 247 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 EIF3EP60228 445 aaKnown RBP4.48□□□□□ -1.69
NUP54-206ENST00000508465 KIF5AQ12840 1032 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 MTM1Q13496 603 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 OLIG2Q13516 323 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 SPARCL1Q14515 664 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 PTPRCAPQ14761 206 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 SMAD1Q15797 465 aaKnown RBP4.48□□□□□ -1.69
NUP54-206ENST00000508465 FAM153CQ494X1 144 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 TEX44Q53QW1 395 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 MTX3Q5HYI7 312 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 SIRPB2Q5JXA9 342 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 HES3Q5TGS1 186 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 ALS2CLQ60I27 953 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 RAET1GQ6H3X3 334 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 C11orf63Q6NUN7 778 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 DARS2Q6PI48 645 aaKnown RBP4.48□□□□□ -1.69
NUP54-206ENST00000508465 C19orf48Q6RUI8 117 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 MACC1Q6ZN28 852 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 PEX26Q7Z412 305 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 TAF8Q7Z7C8 310 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 ZSCAN30Q86W11 494 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 HEATR4Q86WZ0 1026 aa4.48□□□□□ -1.69
NUP54-206ENST00000508465 ZNF567Q8N184 647 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms