RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SNX21Q969T3 373 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 DHX58Q96C10 678 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 HDAC11Q96DB2 347 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 SLC39A13Q96H72 371 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 LMLNQ96KR4 655 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 C1orf74Q96LT6 269 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 GSDMAQ96QA5 445 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 USP28Q96RU2 1077 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 TSG101Q99816 390 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 CCDC3Q9BQI4 270 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 NEUROG2Q9H2A3 272 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 FAM83DQ9H4H8 585 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 NMUR1Q9HB89 426 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 TRIM36Q9NQ86 728 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 CISHQ9NSE2 258 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 ABCB8Q9NUT2 735 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 ASF1BQ9NVP2 202 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 OSER1Q9NX31 292 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 ELOVL5Q9NYP7 299 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 NKX1-2Q9UD57 310 aaPredicted RBP3.9□□□□□ -1.79
USP54-217ENST00000498213 ZNF212Q9UDV6 495 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 RASAL2Q9UJF2 1139 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 RCOR1Q9UKL0 485 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 CNTN6Q9UQ52 1028 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 MTMR6Q9Y217 621 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 HS3ST2Q9Y278 367 aa3.9□□□□□ -1.79
USP54-217ENST00000498213 EME2A4GXA9 379 aaPredicted RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 A6NNZ2 444 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 F5H5T6 163 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 STMND1H3BQB6 276 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 M0QYT0 321 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 O00370 1275 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 CLIC2O15247 247 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 POLR2DO15514 142 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 HCRTO43612 131 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 TSPAN6O43657 245 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 RNASEH2AO75792 299 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 BEST1O76090 585 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 FGFR1OPO95684 399 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 CCL4P13236 92 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 HTR1EP28566 365 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 ADORA2BP29275 332 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 CCR1P32246 355 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 UGT1A3P35503 534 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 RBMXP38159 391 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 CSKP41240 450 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 ME1P48163 572 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 CARSP49589 748 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 DIO1P49895 249 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 PEX5P50542 639 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 RAD23BP54727 409 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 TBX4P57082 545 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 DAOAP59103 153 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 RPS21P63220 83 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 CCL7P80098 99 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 NUCB2P80303 420 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 FMO1Q01740 532 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 TLE4Q04727 773 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 RUNX1T1Q06455 604 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 STK4Q13043 487 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 EIF4EBP2Q13542 120 aaPredicted RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 STIM1Q13586 685 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 CUL2Q13617 745 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 GRM3Q14832 879 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 DEFB133Q30KQ1 61 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 ZNF750Q32MQ0 723 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 ZCWPW2Q504Y3 356 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 TMEM215Q68D42 235 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 C11orf87Q6NUJ2 197 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 RETSATQ6NUM9 610 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 MZT2AQ6P582 158 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 SHC4Q6S5L8 630 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 CLEC9AQ6UXN8 241 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 KYAT3Q6YP21 454 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 TMEM110Q86TL2 294 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 PARGQ86W56 976 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 HORMAD1Q86X24 394 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 ZC3H3Q8IXZ2 948 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 FAM186BQ8IYM0 893 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 FSTL5Q8N475 847 aaPredicted RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 PDILTQ8N807 584 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 C12orf29Q8N999 325 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 DCAF4L2Q8NA75 395 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 SLC4A11Q8NBS3 891 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 KIAA0895Q8NCT3 520 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 CHDHQ8NE62 594 aaPredicted RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 NOC3LQ8WTT2 800 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 ISG20Q96AZ6 181 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 ARSGQ96EG1 525 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 PGAP3Q96FM1 320 aaPredicted RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 HMCESQ96FZ2 354 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 APIPQ96GX9 242 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 FEM1CQ96JP0 617 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 SLC45A3Q96JT2 553 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 HIST1H2AAQ96QV6 131 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 GFM1Q96RP9 751 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 INTS2Q9H0H0 1204 aaKnown RBP3.89□□□□□ -1.79
USP54-217ENST00000498213 SDCBP2Q9H190 292 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 THAP9Q9H5L6 903 aa3.89□□□□□ -1.79
USP54-217ENST00000498213 GPN2Q9H9Y4 310 aaPredicted RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms