RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	OR1D4	P47884	311 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	NPY2R	P49146	381 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	VSX2	P58304	361 aa	Predicted RBP	11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	SNRPN	P63162	240 aa	Known RBP	11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	GPS1	Q13098	491 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	MRPL49	Q13405	166 aa	Known RBP	11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	SSPN	Q14714	243 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	INPP5J	Q15735	1006 aa	Predicted RBP	11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	NKG7	Q16617	165 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	ACSBG2	Q5FVE4	666 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	RNF44	Q7L0R7	432 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	OTOA	Q7RTW8	1153 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	ATCAY	Q86WG3	371 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	DENND6A	Q8IWF6	608 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	OR4N4	Q8N0Y3	316 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	GALNT16	Q8N428	558 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	AMER2	Q8N7J2	671 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	GALNT11	Q8NCW6	608 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	TRIM58	Q8NG06	486 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	OR2A1	Q8NGT9	310 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	HMGCLL1	Q8TB92	370 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	SKA2	Q8WVK7	121 aa	Predicted RBP	11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	RAD51AP1	Q96B01	352 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	C19orf60	Q96EN9	201 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	PSMG3-AS1	Q96PY0	264 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	PANX3	Q96QZ0	392 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	ZNF552	Q9H707	407 aa	Predicted RBP	11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	ENAM	Q9NRM1	1142 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	CUTC	Q9NTM9	273 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	GPN3	Q9UHW5	284 aa	Predicted RBP	11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	SLC39A10	Q9ULF5	831 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	NEU2	Q9Y3R4	380 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	HS3ST3B1	Q9Y662	390 aa		11.15	□□□□□ -0.62
VTI1A-208	ENST00000494728	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728		A0A0J9YVX5	310 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	FITM1	A5D6W6	292 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	TCP11X1	B4DZS4	312 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	GOLGA8M	H3BSY2	632 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	SOCS6	O14544	535 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	DSCR3	O14972	297 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	KDM1A	O60341	852 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	DPM1	O60762	260 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	SEMA7A	O75326	666 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	ONECUT2	O95948	504 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	ERG	P11308	486 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	ALAS2	P22557	587 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	PPARG	P37231	505 aa	Predicted RBP	11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	RRAD	P55042	308 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	MYBPC3	Q14896	1274 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	PLEKHN1	Q494U1	663 aa	Predicted RBP	11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	VWA5B1	Q5TIE3	1220 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZNF549	Q6P9A3	640 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	SUSD1	Q6UWL2	747 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	LRRC6	Q86X45	466 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	CILP2	Q8IUL8	1156 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	RASGEF1C	Q8N431	466 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	PNPLA2	Q96AD5	504 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	FKBP10	Q96AY3	582 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZNF669	Q96BR6	464 aa	Predicted RBP	11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	PTER	Q96BW5	349 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	C10orf90	Q96M02	699 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	C17orf62	Q9BQA9	187 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	SELENOS	Q9BQE4	189 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	ACAT2	Q9BWD1	397 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	SOX17	Q9H6I2	414 aa	Predicted RBP	11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	FBXL4	Q9UKA2	621 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	NTNG1	Q9Y2I2	539 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	PCDHGB7	Q9Y5F8	929 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	KLK4	Q9Y5K2	254 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	MAU2	Q9Y6X3	613 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	CROCC	Q5TZA2	2017 aa		11.14	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZCWPW2	A0A1B0GU75	182 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	OR2A25	A4D2G3	310 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728		F8W8V4	182 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	FFAR3	O14843	346 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	GPR42	O15529	346 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	PSIP1	O75475	530 aa	Known RBP	11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	KRT14	P02533	472 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	OGN	P20774	298 aa	Known RBP	11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	ATP5D	P30049	168 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	MAGEA3	P43357	314 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	CLCN7	P51798	805 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	EFNA3	P52797	238 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	CDK16	Q00536	496 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728		Q0VFX4	171 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	CTBP1	Q13363	440 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	CUL1	Q13616	776 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	CYP2A13	Q16696	494 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	WASHC2D	Q5SRD0	308 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	ZNF470	Q6ECI4	717 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	MRNIP	Q6NTE8	343 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	KIRREL2	Q6UWL6	708 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	C4orf22	Q6V702	233 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	OVCH1	Q7RTY7	1134 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	SHISA5	Q8N114	240 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	EFCAB3	Q8N7B9	438 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	CLEC1A	Q8NC01	280 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	PPFIBP2	Q8ND30	876 aa		11.13	□□□□□ -0.63
VTI1A-208	ENST00000494728	UBE2Q2	Q8WVN8	375 aa		11.13	□□□□□ -0.63

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