RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 IRAK1BP1Q5VVH5 260 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 PTRHD1Q6GMV3 140 aaKnown RBP12.1□□□□□ -0.47
SKA1-205ENST00000494518 FRMPD2BQ6IN97 320 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 CNSTQ6PJW8 725 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 OR2L8Q8NGY9 312 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 GRHL3Q8TE85 626 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 C1orf54Q8WWF1 131 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 ASZ1Q8WWH4 475 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 FAM136AQ96C01 138 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 C8orf44Q96CB5 159 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 THOC3Q96J01 351 aaKnown RBP12.1□□□□□ -0.47
SKA1-205ENST00000494518 AGAP4Q96P64 663 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 MIPEPQ99797 713 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 TSSK1BQ9BXA7 367 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 RAB6BQ9NRW1 208 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 AGPAT4Q9NRZ5 378 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 CATSPERZQ9NTU4 200 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 INTS7Q9NVH2 962 aaKnown RBP12.1□□□□□ -0.47
SKA1-205ENST00000494518 CPAMD8Q8IZJ3 1885 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 SCN3AQ9NY46 2000 aa12.1□□□□□ -0.47
SKA1-205ENST00000494518 A0A0J9YVX5 310 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 MIF4GDA9UHW6 222 aaKnown RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 F8W8V4 182 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 E2F3O00716 465 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 LRRTM2O43300 516 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 LIASO43766 372 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 S1PR4O95977 384 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 ZSCAN5DPP0CG00 497 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 PIM1P11309 404 aaPredicted RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 ADRA1DP25100 572 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 AOAHP28039 575 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 FDFT1P37268 417 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 SESN2P58004 480 aaPredicted RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 YBX1P67809 324 aaKnown RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 ZNF169Q14929 603 aaPredicted RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 TMED2Q15363 201 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 OASLQ15646 514 aaKnown RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 ZC3H12BQ5HYM0 836 aaKnown RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 WASHC2DQ5SRD0 308 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 UNC5DQ6UXZ4 953 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 KCNMB4Q86W47 210 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 SYCE1Q8N0S2 351 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 OTUD6BQ8N6M0 293 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 ST6GALNAC3Q8NDV1 305 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 CATSPER1Q8NEC5 780 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 PPHLN1Q8NEY8 458 aaKnown RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 OR11G2Q8NGC1 345 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 PPP4R1Q8TF05 950 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 SLC22A18Q96BI1 424 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 BARD1Q99728 777 aaKnown RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 CRB3Q9BUF7 120 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 CARD6Q9BX69 1037 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 WDR54Q9H977 334 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 ZNF160Q9HCG1 818 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 ANAPC5Q9UJX4 755 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 TTC7AQ9ULT0 858 aaPredicted RBP12.09□□□□□ -0.47
SKA1-205ENST00000494518 ZNF148Q9UQR1 794 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 CAPN6Q9Y6Q1 641 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 PKDREJQ9NTG1 2253 aa12.09□□□□□ -0.47
SKA1-205ENST00000494518 APCP25054 2843 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 LOC105369274A0A096LPK9 316 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 LOC102723532A0A0G2JNH3 316 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 HYKKA2RU49 373 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 ERI2A8K979 691 aaKnown RBP12.08□□□□□ -0.48
SKA1-205ENST00000494518 PRMT5O14744 637 aaPredicted RBP12.08□□□□□ -0.48
SKA1-205ENST00000494518 KLHL18O94889 574 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 SUN1O94901 812 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 F10P00742 488 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 ALBP02768 609 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 APRTP07741 180 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 EIF3BP55884 814 aaKnown RBP12.08□□□□□ -0.48
SKA1-205ENST00000494518 ACVR1Q04771 509 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 SRSF11Q05519 484 aaKnown RBP12.08□□□□□ -0.48
SKA1-205ENST00000494518 TCTE1Q5JU00 501 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 SEL1L2Q5TEA6 688 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 OR4N4Q8N0Y3 316 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 AMER2Q8N7J2 671 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 GSDMBQ8TAX9 411 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 DENND1AQ8TEH3 1009 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 MAGEB10Q96LZ2 347 aaPredicted RBP12.08□□□□□ -0.48
SKA1-205ENST00000494518 ACAT2Q9BWD1 397 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 LHPPQ9H008 270 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 SLC26A1Q9H2B4 701 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 EPS8L2Q9H6S3 715 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 CHRAC1Q9NRG0 131 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 ZC3H7BQ9UGR2 993 aaKnown RBP12.08□□□□□ -0.48
SKA1-205ENST00000494518 FAM169AQ9Y6X4 670 aa12.08□□□□□ -0.48
SKA1-205ENST00000494518 ARHGAP10A1A4S6 786 aa12.07□□□□□ -0.48
SKA1-205ENST00000494518 GOLGA8KD6RF30 607 aa12.07□□□□□ -0.48
SKA1-205ENST00000494518 GOLGA8TH3BQL2 631 aa12.07□□□□□ -0.48
SKA1-205ENST00000494518 CD3EAPO15446 510 aaKnown RBP12.07□□□□□ -0.48
SKA1-205ENST00000494518 PRICKLE3O43900 615 aaPredicted RBP12.07□□□□□ -0.48
SKA1-205ENST00000494518 SLCO2B1O94956 709 aa12.07□□□□□ -0.48
SKA1-205ENST00000494518 C1orf105O95561 183 aa12.07□□□□□ -0.48
SKA1-205ENST00000494518 ONECUT2O95948 504 aa12.07□□□□□ -0.48
SKA1-205ENST00000494518 PPARGP37231 505 aaPredicted RBP12.07□□□□□ -0.48
SKA1-205ENST00000494518 TSFMP43897 325 aaKnown RBP12.07□□□□□ -0.48
SKA1-205ENST00000494518 TERF1P54274 439 aa12.07□□□□□ -0.48
SKA1-205ENST00000494518 EEF1A2Q05639 463 aaKnown RBP12.07□□□□□ -0.48
SKA1-205ENST00000494518 KLC1Q07866 573 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms