RNA–Protein interactions for RNA: ENST00000493582.5

HDAC4-210, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,188 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-210ENST00000493582 NXF3Q9H4D5 531 aaKnown RBP11.4□□□□□ -0.58
HDAC4-210ENST00000493582 RAD18Q9NS91 495 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 ABI2Q9NYB9 513 aaPredicted RBP11.4□□□□□ -0.58
HDAC4-210ENST00000493582 CD274Q9NZQ7 290 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 NEU3Q9UQ49 428 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 MED16Q9Y2X0 877 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 ZNF451Q9Y4E5 1061 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 SNTNA6NMZ2 147 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 CLCA1A8K7I4 914 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 M0R129 80 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 GFRA2O00451 464 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 E2F3O00716 465 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 OR2B3O76000 313 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 TRAPPC2P0DI81 140 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 TRAPPC2BP0DI82 140 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 WEE1P30291 646 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 DNAJA1P31689 397 aaKnown RBP11.4□□□□□ -0.58
HDAC4-210ENST00000493582 MED22Q15528 200 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 SIRPB2Q5JXA9 342 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 ZNF648Q5T619 568 aaPredicted RBP11.4□□□□□ -0.58
HDAC4-210ENST00000493582 CATSPERGQ6ZRH7 1159 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 GALNT7Q86SF2 657 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 FAM217AQ8IXS0 508 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 DNAJC22Q8N4W6 341 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 MYDGFQ969H8 173 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 TRMT61AQ96FX7 289 aaKnown RBP11.4□□□□□ -0.58
HDAC4-210ENST00000493582 OR52E6Q96RD3 313 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 AARSD1Q9BTE6 412 aaKnown RBP11.4□□□□□ -0.58
HDAC4-210ENST00000493582 GABARAPL1Q9H0R8 117 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 C11orf54Q9H0W9 315 aaPredicted RBP11.4□□□□□ -0.58
HDAC4-210ENST00000493582 SMURF1Q9HCE7 757 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 EXOSC4Q9NPD3 245 aaKnown RBP11.4□□□□□ -0.58
HDAC4-210ENST00000493582 DYRK4Q9NR20 520 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 UCKL1Q9NWZ5 548 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 HECAQ9UBI9 543 aaPredicted RBP11.4□□□□□ -0.58
HDAC4-210ENST00000493582 SPASTQ9UBP0 616 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 CFL2Q9Y281 166 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 HSPB11Q9Y547 144 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 LCTP09848 1927 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 TSC2P49815 1807 aa11.4□□□□□ -0.58
HDAC4-210ENST00000493582 PLK4O00444 970 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 PIRO00625 290 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 TSC22D2O75157 780 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 ERN1O75460 977 aaKnown RBP11.4□□□□□ -0.59
HDAC4-210ENST00000493582 F9P00740 461 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 PGK2P07205 417 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 RPS19P39019 145 aaKnown RBP11.4□□□□□ -0.59
HDAC4-210ENST00000493582 MAGEA2P43356 314 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 IDH2P48735 452 aaKnown RBP11.4□□□□□ -0.59
HDAC4-210ENST00000493582 GZMKP49863 264 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 SUOXP51687 545 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 SLC10A7Q0GE19 358 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 ST3GAL4Q11206 333 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 TSTQ16762 297 aaKnown RBP11.4□□□□□ -0.59
HDAC4-210ENST00000493582 NBPF12Q5TAG4 269 aaPredicted RBP11.4□□□□□ -0.59
HDAC4-210ENST00000493582 CACHD1Q5VU97 1274 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 TMPRSS11AQ6ZMR5 421 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 STX19Q8N4C7 294 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 OR52E4Q8NGH9 312 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 FRMD6Q96NE9 622 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 GPR21Q99679 349 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 SMOQ99835 787 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 CNPPD1Q9BV87 410 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 BARHL1Q9BZE3 327 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 QTRT2Q9H974 415 aaKnown RBP11.4□□□□□ -0.59
HDAC4-210ENST00000493582 IL1RAPQ9NPH3 570 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF277Q9NRM2 450 aaPredicted RBP11.4□□□□□ -0.59
HDAC4-210ENST00000493582 HCN4Q9Y3Q4 1203 aa11.4□□□□□ -0.59
HDAC4-210ENST00000493582 DNMT3AQ9Y6K1 912 aaPredicted RBP11.4□□□□□ -0.59
HDAC4-210ENST00000493582 GABRDO14764 452 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 FPR1P21462 350 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 EDNRBP24530 442 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 MAPK12P53778 367 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 RAD51Q06609 339 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 SOX4Q06945 474 aaPredicted RBP11.39□□□□□ -0.59
HDAC4-210ENST00000493582 DOC2BQ14184 412 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 GJC2Q5T442 439 aaPredicted RBP11.39□□□□□ -0.59
HDAC4-210ENST00000493582 WSCD1Q658N2 575 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 GLCCI1Q86VQ1 547 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 ZBTB18Q99592 522 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 ZSCAN5AQ9BUG6 496 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 DERL2Q9GZP9 239 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 SLC25A51Q9H1U9 297 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 CACNG4Q9UBN1 327 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 ZNF112Q9UJU3 913 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 RECQL4O94761 1208 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 GSTM1P09488 218 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 NAGAP17050 411 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 CTRB1P17538 263 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 SLC9A3P48764 834 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 HMGCS1Q01581 520 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 SMARCB1Q12824 385 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 DALRD3Q5D0E6 543 aaKnown RBP11.39□□□□□ -0.59
HDAC4-210ENST00000493582 CTRB2Q6GPI1 263 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 MRNIPQ6NTE8 343 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 PGAP3Q96FM1 320 aaPredicted RBP11.39□□□□□ -0.59
HDAC4-210ENST00000493582 DPY30Q9C005 99 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 SLC7A5P2Q9GIP4 190 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 ATP13A1Q9HD20 1204 aa11.39□□□□□ -0.59
HDAC4-210ENST00000493582 ASAH2Q9NR71 780 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms