RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 KLK4Q9Y5K2 254 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 FAM169AQ9Y6X4 670 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 HCFC1P51610 2035 aa13.57□□□□□ -0.24
PRPF40A-211ENST00000493468 LOC102723996A0A087X1L8 192 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 HYKKA2RU49 373 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 SMTNL1A8MU46 457 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 MED26O95402 600 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 NADKO95544 446 aaPredicted RBP13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 ICAM2P13598 275 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 CD99P14209 185 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 IGFBP2P18065 325 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 CD9P21926 228 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 PMP22Q01453 160 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 ITIH4Q14624 930 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 SLC18A3Q16572 532 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 DBN1Q16643 649 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 SYTL3Q4VX76 610 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 TFDP3Q5H9I0 405 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 ABHD17BQ5VST6 288 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 CLEC17AQ6ZS10 378 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 MMP21Q8N119 569 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 DTWD1Q8N5C7 304 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 ARNT2Q9HBZ2 717 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 TEKT2Q9UIF3 430 aa13.56□□□□□ -0.24
PRPF40A-211ENST00000493468 ACANP16112 2415 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 INTS1Q8N201 2190 aaKnown RBP13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 IDSB3KWA1 339 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 CCL22O00626 93 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 WISP2O76076 250 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 RPN2P04844 631 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 ITGAMP11215 1152 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 FBLP22087 321 aaKnown RBP13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 GRIA3P42263 894 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 SLC1A1P43005 524 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 EMP2P54851 167 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 EMP3P54852 163 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 VSX2P58304 361 aaPredicted RBP13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 SRSF11Q05519 484 aaKnown RBP13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 EEF1A2Q05639 463 aaKnown RBP13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 TYRO3Q06418 890 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 MUM1Q2TAK8 710 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 ZNF766Q5HY98 468 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 WASHC2DQ5SRD0 308 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 DENND5AQ6IQ26 1287 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 TAS2R42Q7RTR8 314 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 LAPTM4BQ86VI4 370 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 PIANPQ8IYJ0 282 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 PRSS58Q8IYP2 241 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 EID3Q8N140 333 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 OR2L8Q8NGY9 312 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 SLC35G2Q8TBE7 412 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 MVB12AQ96EY5 273 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 DNAJC1Q96KC8 554 aaKnown RBP13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 APOL2Q9BQE5 337 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 ZNF700Q9H0M5 742 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 NLE1Q9NVX2 485 aaPredicted RBP13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 SMARCAL1Q9NZC9 954 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 TNFRSF10DQ9UBN6 386 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 PRSS21Q9Y6M0 314 aa13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 PRRC2AP48634 2157 aaKnown RBP13.55□□□□□ -0.24
PRPF40A-211ENST00000493468 MAP1AP78559 2803 aaPredicted RBP13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 A0A1B0GTL3 188 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 ASPDHA6ND91 283 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 E9PLN8 166 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 PRPF4O43172 522 aaKnown RBP eCLIP13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 CTSVO60911 334 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 CELA2AP08217 269 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 PRSS56P0CW18 603 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 OLIG2Q13516 323 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 DSG2Q14126 1118 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 GRB7Q14451 532 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 PCOLCEQ15113 449 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 ARHGEF18Q6ZSZ5 1173 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 DCUN1D3Q8IWE4 304 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 RHOT2Q8IXI1 618 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 SLC22A15Q8IZD6 547 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 C10orf90Q96M02 699 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 PPP1R2P1Q96PQ5 205 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 DMRTA2Q96SC8 542 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 VKORC1Q9BQB6 163 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 TUBB6Q9BUF5 446 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 RAB11FIP5Q9BXF6 653 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 TGIF2Q9GZN2 237 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 CXXC4Q9H2H0 198 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 CDC14AQ9UNH5 594 aa13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 LUC7L2Q9Y383 392 aaKnown RBP13.54□□□□□ -0.24
PRPF40A-211ENST00000493468 FOXO6A8MYZ6 492 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 RASGRF2O14827 1237 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 TTI1O43156 1089 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 SERPINC1P01008 464 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 ALDH6A1Q02252 535 aaKnown RBP13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 ZNF33BQ06732 778 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 PRPSAP1Q14558 356 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 BRD3Q15059 726 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 SF1Q15637 639 aaKnown RBP13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 KAZNQ674X7 775 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 FRMPD2BQ6IN97 320 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 TMEM205Q6UW68 189 aa13.53□□□□□ -0.24
PRPF40A-211ENST00000493468 UNC5DQ6UXZ4 953 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms