RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 POLNQ7Z5Q5 900 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 LUZP2Q86TE4 346 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ITIH5Q86UX2 942 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 RBM45Q8IUH3 476 aaKnown RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ARHGAP12Q8IWW6 846 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 BBS7Q8IWZ6 715 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ENTHD1Q8IYW4 607 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 KIRREL3Q8IZU9 778 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PCDH20Q8N6Y1 951 aaKnown RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CYB561A3Q8NBI2 242 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ZNF397Q8NF99 534 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 OR13H1Q8NG92 308 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 OR56A3Q8NH54 315 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 LHFPL5Q8TAF8 219 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ACTL9Q8TC94 416 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 DDX54Q8TDD1 881 aaKnown RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 TCP10LQ8TDR4 215 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 KCTD4Q8WVF5 259 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 HSD17B8Q92506 261 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 FIG4Q92562 907 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SLC7A6OSQ96CW6 309 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PGAM5Q96HS1 289 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 VRK1Q99986 396 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 FAM213AQ9BRX8 229 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 HOXD1Q9GZZ0 328 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 RAB1BQ9H0U4 201 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM168Q9H0V1 697 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ANKRA2Q9H9E1 313 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CSNK1G1Q9HCP0 422 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ADAP2Q9NPF8 381 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MKKSQ9NPJ1 570 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 FAM105AQ9NUU6 356 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 OLAHQ9NV23 265 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 THUMPD1Q9NXG2 353 aaKnown RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 HAO2Q9NYQ3 351 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 GDE1Q9NZC3 331 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 STOML1Q9UBI4 398 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 C3orf18Q9UK00 162 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PCDHA4Q9UN74 947 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PLA2G4CQ9UP65 541 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ACOT9Q9Y305 439 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 AK9Q5TCS8 1911 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PBRM1Q86U86 1689 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 NRCAMQ92823 1304 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CNTNAP2Q9UHC6 1331 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PRAMEF25A6NGN4 478 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SAC3D1A6NKF1 404 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 LINC00587B1AMM8 73 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM233B4DJY2 109 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PRAMEF26H0Y7S4 382 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 TEX46H3BTG2 121 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 H7C0C1 242 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PYCARD-AS1I3L0S3 204 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 WWP2O00308 870 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MATN2O00339 956 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 KDELR3O43731 214 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 BUB1BO60566 1050 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 TSPAN2O60636 221 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PRAMEF4O60810 478 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PRAMEF11O60813 436 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 LRCH4O75427 683 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 RASSF9O75901 435 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ZBTB11O95625 1053 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 GH1P01241 217 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CFIP05156 583 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SBK2P0C263 348 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MSH3P20585 1137 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CDH5P33151 784 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 TMPOP42166 694 aaKnown RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CXCR3P49682 368 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CLK3P49761 638 aaKnown RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 RASSF2P50749 326 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 IST1P53990 364 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SESN2P58004 480 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PTENP60484 403 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 VSNL1P62760 191 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 IRF8Q02556 426 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CDH17Q12864 832 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SLAMF1Q13291 335 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 RAB32Q13637 225 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PON3Q15166 354 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CYTH1Q15438 398 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SSX2Q16385 188 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 KIZQ2M2Z5 673 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ZC2HC1CQ53FD0 456 aaPredicted RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 PRRT3Q5FWE3 981 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 ZNF789Q5FWF6 425 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MFSD14BQ5SR56 506 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CDKAL1Q5VV42 579 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SCARA3Q6AZY7 606 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 MSANTD2Q6P1R3 559 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SLC27A1Q6PCB7 646 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM220Q6QAJ8 160 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 VSTM1Q6UX27 236 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 TMEM108Q6UXF1 575 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SLC35D2Q76EJ3 337 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 SLC26A9Q7LBE3 791 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 FBXO11Q86XK2 927 aa4.1□□□□□ -1.75
BRCA1-220ENST00000492859 CPNE8Q86YQ8 564 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms