RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 DNAJB14Q8TBM8 379 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 GRHL3Q8TE85 626 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 ZUFSPQ96AP4 578 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 MIPEPQ99797 713 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 MESP1Q9BRJ9 268 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 RAB11FIP5Q9BXF6 653 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 LHPPQ9H008 270 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 P2RY12Q9H244 342 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 EPS8L2Q9H6S3 715 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 RAB6BQ9NRW1 208 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 SEMA3GQ9NS98 782 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 CATSPERZQ9NTU4 200 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 RUVBL2Q9Y230 463 aaKnown RBP11.86□□□□□ -0.51
CPSF3-204ENST00000489403 MAU2Q9Y6X3 613 aa11.86□□□□□ -0.51
CPSF3-204ENST00000489403 FKBP9O95302 570 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 VSX2P58304 361 aaPredicted RBP11.85□□□□□ -0.51
CPSF3-204ENST00000489403 KIF5AQ12840 1032 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 ZNF169Q14929 603 aaPredicted RBP11.85□□□□□ -0.51
CPSF3-204ENST00000489403 FAM214AQ32MH5 1076 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 WASHC2DQ5SRD0 308 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 SEL1L2Q5TEA6 688 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 IRAK1BP1Q5VVH5 260 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 CRYBG3Q68DQ2 2970 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 PTRHD1Q6GMV3 140 aaKnown RBP11.85□□□□□ -0.51
CPSF3-204ENST00000489403 PPHLN1Q8NEY8 458 aaKnown RBP11.85□□□□□ -0.51
CPSF3-204ENST00000489403 COG1Q8WTW3 980 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 C1orf54Q8WWF1 131 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 THOC3Q96J01 351 aaKnown RBP11.85□□□□□ -0.51
CPSF3-204ENST00000489403 CNDP1Q96KN2 507 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 PANX3Q96QZ0 392 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 BAG1Q99933 345 aaPredicted RBP11.85□□□□□ -0.51
CPSF3-204ENST00000489403 DESI2Q9BSY9 194 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 CRB3Q9BUF7 120 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 CHRAC1Q9NRG0 131 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 IL1RAPL1Q9NZN1 696 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 GNPTGQ9UJJ9 305 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 ANAPC5Q9UJX4 755 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 KLK4Q9Y5K2 254 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 DOPEY1Q5JWR5 2465 aa11.85□□□□□ -0.51
CPSF3-204ENST00000489403 A0A0J9YVX5 310 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 A0A1W2PPV9 198 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 HYKKA2RU49 373 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 CD3EAPO15446 510 aaKnown RBP11.84□□□□□ -0.51
CPSF3-204ENST00000489403 SRPX2O60687 465 aaPredicted RBP11.84□□□□□ -0.51
CPSF3-204ENST00000489403 APRTP07741 180 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 ZSCAN5DPP0CG00 497 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 TTPAP49638 278 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 KLC1Q07866 573 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 CDC16Q13042 620 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 FASTKQ14296 549 aaKnown RBP11.84□□□□□ -0.51
CPSF3-204ENST00000489403 PCID2Q5JVF3 399 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 B3GNTL1Q67FW5 361 aaPredicted RBP11.84□□□□□ -0.51
CPSF3-204ENST00000489403 TTC23LQ6PF05 361 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 RNF44Q7L0R7 432 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 TICAM1Q8IUC6 712 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 OR2L3Q8NG85 312 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 OR2A1Q8NGT9 310 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 HMGCLL1Q8TB92 370 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 STT3BQ8TCJ2 826 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 FAR1Q8WVX9 515 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 RAD51AP1Q96B01 352 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 C10orf90Q96M02 699 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 FRMD8P1Q9BZ68 369 aaPredicted RBP11.84□□□□□ -0.51
CPSF3-204ENST00000489403 ZNF304Q9HCX3 659 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 TREX1Q9NSU2 369 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 PAK5Q9P286 719 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 ZC3H7BQ9UGR2 993 aaKnown RBP11.84□□□□□ -0.51
CPSF3-204ENST00000489403 TTC7AQ9ULT0 858 aaPredicted RBP11.84□□□□□ -0.51
CPSF3-204ENST00000489403 ZNF148Q9UQR1 794 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 FAM169AQ9Y6X4 670 aa11.84□□□□□ -0.51
CPSF3-204ENST00000489403 CELSR2Q9HCU4 2923 aa11.83□□□□□ -0.51
CPSF3-204ENST00000489403 LOC105369274A0A096LPK9 316 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 LOC102723532A0A0G2JNH3 316 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 LRRTM2O43300 516 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 KLHL18O94889 574 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 HPP00738 406 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 ZGLP1P0C6A0 271 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 EDN3P14138 238 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 RPS3P23396 243 aaKnown RBP eCLIP11.83□□□□□ -0.52
CPSF3-204ENST00000489403 NMBRP28336 390 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 CARSP49589 748 aaKnown RBP11.83□□□□□ -0.52
CPSF3-204ENST00000489403 SESN2P58004 480 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-204ENST00000489403 YBX1P67809 324 aaKnown RBP11.83□□□□□ -0.52
CPSF3-204ENST00000489403 CRADDP78560 199 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 MFAP5Q13361 173 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 SNX1Q13596 522 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 TLR1Q15399 786 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 CTSL3PQ5NE16 218 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 C1QL3Q5VWW1 255 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 PRMT9Q6P2P2 845 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 CNSTQ6PJW8 725 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 ISLR2Q6UXK2 745 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 LINC00696Q6ZRV3 163 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 OTOAQ7RTW8 1153 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 SLC13A5Q86YT5 568 aaPredicted RBP11.83□□□□□ -0.52
CPSF3-204ENST00000489403 PRSS58Q8IYP2 241 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 OR4N4Q8N0Y3 316 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 RAB42Q8N4Z0 105 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 CATSPER1Q8NEC5 780 aa11.83□□□□□ -0.52
CPSF3-204ENST00000489403 GSDMBQ8TAX9 411 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms