RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 POP7O75817 140 aaKnown RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 DLGAP3O95886 979 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 SOD1P00441 154 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 GSTM1P09488 218 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 ZNF8P17098 575 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 IDSP22304 550 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 TNFRSF8P28908 595 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 NOS3P29474 1203 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 FMO4P31512 558 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 FOXN2P32314 431 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 ARCN1P48444 511 aaKnown RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 SEPHS1P49903 392 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 CDKN1CP49918 316 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 SLC12A2P55011 1212 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 PLOD1Q02809 727 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 GSTM4Q03013 218 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 CTBP1Q13363 440 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 FRG1Q14331 258 aaKnown RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 KRT33BQ14525 404 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 ZNF648Q5T619 568 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 FHL5Q5TD97 284 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 ZNF470Q6ECI4 717 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 UGT3A1Q6NUS8 523 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 WDR74Q6RFH5 385 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 KIAA0408Q6ZU52 694 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 LDB1Q86U70 411 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 AMZ2Q86W34 360 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 RELL1Q8IUW5 271 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 CFAP206Q8IYR0 622 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 SFRP1Q8N474 314 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 ESX1Q8N693 406 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 UBLCP1Q8WVY7 318 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 CYTH2Q99418 400 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 ZPBPQ9BS86 351 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 CCM2Q9BSQ5 444 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 ULBP3Q9BZM4 244 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 ADAM19Q9H013 955 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 ANKZF1Q9H8Y5 726 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 TBC1D29Q9UFV1 150 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 GNPTGQ9UJJ9 305 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 FOXD3Q9UJU5 478 aaPredicted RBP8.49□□□□□ -1.05
USP4-213ENST00000488520 CROTQ9UKG9 612 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 FBXO5Q9UKT4 447 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 KCNK6Q9Y257 313 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 CRYL1Q9Y2S2 319 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 COMMD10Q9Y6G5 202 aa8.49□□□□□ -1.05
USP4-213ENST00000488520 TRBV5-4A0A0C4DH59 114 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 GAPDHSO14556 408 aaPredicted RBP8.48□□□□□ -1.05
USP4-213ENST00000488520 EREGO14944 169 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 TP73O15350 636 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 DYRK3O43781 588 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 SEMA7AO75326 666 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 DNAJB5O75953 348 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 KIAA0754O94854 1291 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 HAUS5O94927 633 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 ACSL3O95573 720 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 ESR1P03372 595 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 PRSS56P0CW18 603 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 RNF224P0DH78 156 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 ACP5P13686 325 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 EDN3P14138 238 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 SLC2A4P14672 509 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 TYRP1P17643 537 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 PBLDP30039 288 aaPredicted RBP8.48□□□□□ -1.05
USP4-213ENST00000488520 SPRP35270 261 aaPredicted RBP8.48□□□□□ -1.05
USP4-213ENST00000488520 HALP42357 657 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 MSH2P43246 934 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 CD151P48509 253 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 GFERP55789 205 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 EIF3BP55884 814 aaKnown RBP8.48□□□□□ -1.05
USP4-213ENST00000488520 NAB1Q13506 487 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 LRP8Q14114 963 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 FASTKD3Q14CZ7 662 aaKnown RBP8.48□□□□□ -1.05
USP4-213ENST00000488520 TMED2Q15363 201 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 UAP1Q16222 522 aaPredicted RBP8.48□□□□□ -1.05
USP4-213ENST00000488520 KLHL38Q2WGJ6 581 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 SYTL3Q4VX76 610 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 TEDDM1Q5T9Z0 273 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 GRTP1Q5TC63 336 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 STEAP4Q687X5 459 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 CAPRIN2Q6IMN6 1127 aaKnown RBP8.48□□□□□ -1.05
USP4-213ENST00000488520 TCTN3Q6NUS6 607 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 EMBQ6PCB8 327 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 CRTC3Q6UUV7 619 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 C6orf15Q6UXA7 325 aaPredicted RBP8.48□□□□□ -1.05
USP4-213ENST00000488520 STRA8Q7Z7C7 330 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 SLC26A11Q86WA9 606 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 CILP2Q8IUL8 1156 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 RASGRP3Q8IV61 690 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 PIANPQ8IYJ0 282 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 CNPY4Q8N129 248 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 PPM1NQ8N819 430 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 RASGEF1AQ8N9B8 481 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 CPT1CQ8TCG5 803 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 FBF1Q8TES7 1133 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 SSC4DQ8WTU2 575 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 TP53INP1Q96A56 240 aa8.48□□□□□ -1.05
USP4-213ENST00000488520 MRRFQ96E11 262 aaKnown RBP8.48□□□□□ -1.05
USP4-213ENST00000488520 VPS39Q96JC1 886 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms