RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 GABRR2P28476 465 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 MAPK8P45983 427 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 IL5RAQ01344 420 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 RAPSNQ13702 412 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 SIM2Q14190 667 aaPredicted RBP17.46■□□□□ 0.39
VIM-206ENST00000487938 SPCS2Q15005 226 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 SF1Q15637 639 aaKnown RBP17.46■□□□□ 0.39
VIM-206ENST00000487938 DEFB115Q30KQ5 88 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 LDLRAP1Q5SW96 308 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 GALNT18Q6P9A2 607 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 CYP4Z1Q86W10 505 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 SLAIN1Q8ND83 568 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 REXO5Q96IC2 774 aaKnown RBP17.46■□□□□ 0.39
VIM-206ENST00000487938 HIST1H2AHQ96KK5 128 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 NODALQ96S42 347 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 HIST1H2AJQ99878 128 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 H2AFJQ9BTM1 129 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 SLC12A9Q9BXP2 914 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 GPN2Q9H9Y4 310 aaPredicted RBP17.46■□□□□ 0.39
VIM-206ENST00000487938 FAM8A1Q9UBU6 413 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 LSM7Q9UK45 103 aaKnown RBP17.46■□□□□ 0.39
VIM-206ENST00000487938 TMPRSS11EQ9UL52 423 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 ABCG2Q9UNQ0 655 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 SH3BP1Q9Y3L3 701 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 ORC6Q9Y5N6 252 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 SNX5Q9Y5X3 404 aa17.46■□□□□ 0.39
VIM-206ENST00000487938 MYO1GB0I1T2 1018 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 WNT9AO14904 365 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 GNRH1P01148 92 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 OR56A5P0C7T3 313 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 HTR1BP28222 390 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 PSMD7P51665 324 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 ABHD18Q0P651 414 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 CDK5R2Q13319 367 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 ZCCHC8Q6NZY4 707 aaKnown RBP17.45■□□□□ 0.38
VIM-206ENST00000487938 CRTC3Q6UUV7 619 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 SERPINA13PQ6UXR4 307 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 FKBP9P1Q75LS8 142 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 CEP68Q76N32 757 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 HIPK1Q86Z02 1210 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 OR7A2PQ8NGA2 310 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 FKBP10Q96AY3 582 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 CMTM7Q96FZ5 175 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 BBS2Q9BXC9 721 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 SMG9Q9H0W8 520 aaKnown RBP17.45■□□□□ 0.38
VIM-206ENST00000487938 SUV39H2Q9H5I1 410 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 MRPL17Q9NRX2 175 aaKnown RBP17.45■□□□□ 0.38
VIM-206ENST00000487938 THG1LQ9NWX6 298 aaKnown RBP17.45■□□□□ 0.38
VIM-206ENST00000487938 BLOC1S6Q9UL45 172 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 PITPNM1O00562 1244 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 BCKDKO14874 412 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 HALP42357 657 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 AQP6Q13520 282 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 CPZQ66K79 652 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 LRRC70Q7Z2Q7 622 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 HS6ST3Q8IZP7 471 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 CMTM8Q8IZV2 173 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 DDHD1Q8NEL9 900 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 DNAJB8Q8NHS0 232 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 CDC26Q8NHZ8 85 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 ASB11Q8WXH4 323 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 TMEM169Q96HH4 297 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 MAGED4Q96JG8 741 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 RIBC2Q9H4K1 309 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 ZDHHC6Q9H6R6 413 aa17.45■□□□□ 0.38
VIM-206ENST00000487938 hCG_2039718K7EN88 272 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 NRG2O14511 850 aaPredicted RBP17.44■□□□□ 0.38
VIM-206ENST00000487938 BCAS1O75363 584 aaPredicted RBP17.44■□□□□ 0.38
VIM-206ENST00000487938 AMD1P17707 334 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 EFNA1P20827 205 aaPredicted RBP17.44■□□□□ 0.38
VIM-206ENST00000487938 FMO3P31513 532 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 RAD23AP54725 363 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 GABARAPL2P60520 117 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 SNRPD1P62314 119 aaKnown RBP17.44■□□□□ 0.38
VIM-206ENST00000487938 RAB33AQ14088 237 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 NOXRED1Q6NXP6 359 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 GAREM2Q75VX8 874 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 CYP2U1Q7Z449 544 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 ZNF554Q86TJ5 538 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 FAM217AQ8IXS0 508 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 MUL1Q969V5 352 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 LYSMD1Q96S90 227 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 C19orf43Q9BQ61 176 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 GPBP1L1Q9HC44 474 aaPredicted RBP17.44■□□□□ 0.38
VIM-206ENST00000487938 AASDHPPTQ9NRN7 309 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 ARHGEF15O94989 841 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 OLFM2O95897 454 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 UGT2B4P06133 528 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 C1SP09871 688 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 PCMT1P22061 227 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 IGFBP5P24593 272 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 CA8P35219 290 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 SLC6A12P48065 614 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 ATN1P54259 1190 aaPredicted RBP17.44■□□□□ 0.38
VIM-206ENST00000487938 CHIT1Q13231 466 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 TOP3AQ13472 1001 aaPredicted RBP17.44■□□□□ 0.38
VIM-206ENST00000487938 LAMA3Q16787 3333 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 MPPE1Q53F39 396 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 SLC16A12Q6ZSM3 486 aa17.44■□□□□ 0.38
VIM-206ENST00000487938 ZNF621Q6ZSS3 439 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms