RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 KCNE1BA0A087WTH5 132 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 SPTY2D1-AS1A0A0U1RR47 76 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 TNFRSF10CO14798 259 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 BCAT2O15382 392 aaPredicted RBP13.76□□□□□ -0.21
CUX1-209ENST00000487284 SLC16A8O95907 504 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 IDO1P14902 403 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 PGM1P36871 562 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 ERVK-8P63133 956 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 PCDH1Q08174 1060 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 DMPKQ09013 629 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 SIM2Q14190 667 aaPredicted RBP13.76□□□□□ -0.21
CUX1-209ENST00000487284 FZD2Q14332 565 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 CACNA1EQ15878 2313 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 ALG11Q2TAA5 492 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 PYCR3Q53H96 274 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 C6orf136Q5SQH8 315 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 METRNLQ641Q3 311 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 RD3Q7Z3Z2 195 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 IQCHQ86VS3 1027 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 GALNT13Q8IUC8 556 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 USP7Q93009 1102 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 SCARF2Q96GP6 870 aaPredicted RBP13.76□□□□□ -0.21
CUX1-209ENST00000487284 ZC3H10Q96K80 434 aaKnown RBP13.76□□□□□ -0.21
CUX1-209ENST00000487284 ZDHHC5Q9C0B5 715 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 ATG10Q9H0Y0 220 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 ACTR8Q9H981 624 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 SDR39U1Q9NRG7 319 aaPredicted RBP13.76□□□□□ -0.21
CUX1-209ENST00000487284 TMEM74BQ9NUR3 256 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 AIG1Q9NVV5 245 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 SLC22A14Q9Y267 594 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 CCL27Q9Y4X3 112 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 GPR45Q9Y5Y3 372 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 WDR87Q6ZQQ6 2873 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 PI4KAP42356 2102 aa13.76□□□□□ -0.21
CUX1-209ENST00000487284 TDRD6O60522 2096 aaKnown RBP13.76□□□□□ -0.21
CUX1-209ENST00000487284 A8MUI8 341 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 TLR4O00206 839 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 MANBAO00462 879 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 UGDHO60701 494 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 PEX11AO75192 247 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 CSNK1EP49674 416 aaKnown RBP13.75□□□□□ -0.21
CUX1-209ENST00000487284 RAP1GDS1P52306 607 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 SRP54P61011 504 aaKnown RBP13.75□□□□□ -0.21
CUX1-209ENST00000487284 SLC25A3Q00325 362 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 GRIK2Q13002 908 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 EIF2B5Q13144 721 aaKnown RBP13.75□□□□□ -0.21
CUX1-209ENST00000487284 ABRAXAS2Q15018 415 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 AGKQ53H12 422 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 PRR23BQ6ZRT6 265 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 GK5Q6ZS86 529 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 CHST15Q7LFX5 561 aaPredicted RBP13.75□□□□□ -0.21
CUX1-209ENST00000487284 TRIM46Q7Z4K8 759 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 THOC6Q86W42 341 aaKnown RBP13.75□□□□□ -0.21
CUX1-209ENST00000487284 HID1Q8IV36 788 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 SFRP1Q8N474 314 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 RCN3Q96D15 328 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 TIMM29Q9BSF4 260 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 INTS7Q9NVH2 962 aaKnown RBP13.75□□□□□ -0.21
CUX1-209ENST00000487284 PLEKHM1Q9Y4G2 1056 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 GPSM3Q9Y4H4 160 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 FRYLO94915 3013 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 SLC28A1O00337 649 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 FFAR3O14843 346 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 LSM1O15116 133 aaKnown RBP13.75□□□□□ -0.21
CUX1-209ENST00000487284 GPR42O15529 346 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 PRAMEF4O60810 478 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 WFS1O76024 890 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 KRT6AP02538 564 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 KRT6BP04259 564 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 ACP5P13686 325 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 KRT6CP48668 564 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 AFF3P51826 1226 aaKnown RBP13.75□□□□□ -0.21
CUX1-209ENST00000487284 NUBP1P53384 320 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 NAE1Q13564 534 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 KIF19Q2TAC6 998 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 SMU1Q2TAY7 513 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 ATP6AP1LQ52LC2 224 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 ZNF542PQ5EBM4 170 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 PRAMEF9Q5VWM5 478 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 FUNDC1Q8IVP5 155 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 MIER2Q8N344 545 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 OR9A1PQ8NGU1 263 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 ZNF480Q8WV37 535 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 OR2M4Q96R27 311 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 LRFN3Q9BTN0 628 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 BRINP2Q9C0B6 783 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 TCEAL2Q9H3H9 227 aaPredicted RBP13.75□□□□□ -0.21
CUX1-209ENST00000487284 CCDC167Q9P0B6 97 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 KLF15Q9UIH9 416 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 PILRBQ9UKJ0 227 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 R4GN57 208 aa13.75□□□□□ -0.21
CUX1-209ENST00000487284 TMEM131Q92545 1883 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 A0A088AWK7 358 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 A0A1B0GTW7 788 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 PRR19A6NJB7 356 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 AIM2O14862 343 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 KCNJ13O60928 360 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 ULK1O75385 1050 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 NUDT2P50583 147 aa13.74□□□□□ -0.21
CUX1-209ENST00000487284 DIO3P55073 304 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms