RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 CSNK2BP67870 215 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 EPS8Q12929 822 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 CHAF1BQ13112 559 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 WTAPQ15007 396 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 MEA1Q16626 185 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 PDLIM3Q53GG5 364 aaPredicted RBP3.26□□□□□ -1.89
VPS41-213ENST00000485955 GPRIN3Q6ZVF9 776 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 ARHGAP22Q7Z5H3 698 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 P2RY8Q86VZ1 359 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 LMNTD2Q8IXW0 634 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 MCUQ8NE86 351 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 PIGBQ92521 554 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 ZNF622Q969S3 477 aaKnown RBP eCLIP3.26□□□□□ -1.89
VPS41-213ENST00000485955 TMCO6Q96DC7 493 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 SPACA9Q96E40 222 aaPredicted RBP3.26□□□□□ -1.89
VPS41-213ENST00000485955 SPDL1Q96EA4 605 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 TEX12Q9BXU0 123 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 MIS12Q9H081 205 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 WNT5BQ9H1J7 359 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 GOLPH3LQ9H4A5 285 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 GKN1Q9NS71 199 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 FAM207AQ9NSI2 230 aaPredicted RBP3.26□□□□□ -1.89
VPS41-213ENST00000485955 TBC1D22BQ9NU19 505 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 CRNNQ9UBG3 495 aaPredicted RBP3.26□□□□□ -1.89
VPS41-213ENST00000485955 PCDHGB4Q9UN71 923 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 PADI2Q9Y2J8 665 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 TMED3Q9Y3Q3 217 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 CSAG2Q9Y5P2 127 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 ZHX2Q9Y6X8 837 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 ABCA7Q8IZY2 2146 aa3.26□□□□□ -1.89
VPS41-213ENST00000485955 TARBP1Q13395 1621 aaKnown RBP3.26□□□□□ -1.89
VPS41-213ENST00000485955 ABCC10Q5T3U5 1492 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 CEP164Q9UPV0 1460 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 LOC100509620A0A075B734 347 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 MPTX1A8MV57 137 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 A8MV72 311 aaPredicted RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 SRSF10O75494 262 aaKnown RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 TSPAN9O75954 239 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 VTNP04004 478 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 RBMS1P29558 406 aaKnown RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 NAP1L1P55209 391 aaKnown RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 GSCP56915 257 aaPredicted RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 COX10Q12887 443 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 ELAVL2Q12926 359 aaKnown RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 CALCOCO2Q13137 446 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 MTF1Q14872 753 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 NTRK2Q16620 822 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 C15orf59Q2T9L4 293 aaPredicted RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 ITPRIPL1Q6GPH6 555 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 UGT3A1Q6NUS8 523 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 TAGAPQ8N103 731 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 NME8Q8N427 588 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 MINDY1Q8N5J2 469 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 GPATCH11Q8N954 259 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 THAP8Q8NA92 274 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 GPRC5AQ8NFJ5 357 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 OR10S1Q8NGN2 331 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 OR13C3Q8NGS6 347 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 APOBEC4Q8WW27 367 aaKnown RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 NXNL1Q96CM4 212 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 CALML4Q96GE6 196 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 PKNOX2Q96KN3 472 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 NAP1L5Q96NT1 182 aaPredicted RBP3.25□□□□□ -1.89
VPS41-213ENST00000485955 CCDC3Q9BQI4 270 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 WWTR1Q9GZV5 400 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 PDE7BQ9NP56 450 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 MYNNQ9NPC7 610 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 GIMAP4Q9NUV9 329 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 DPP3Q9NY33 737 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 GDE1Q9NZC3 331 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 MOB4Q9Y3A3 225 aa3.25□□□□□ -1.89
VPS41-213ENST00000485955 EPHB6O15197 1021 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 IDH3BO43837 385 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 IGHV2-70P01814 119 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 HAPLN1P10915 354 aaPredicted RBP3.24□□□□□ -1.89
VPS41-213ENST00000485955 CAPN2P17655 700 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 ALOX12P18054 663 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 SAT1P21673 171 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 PRKACGP22612 351 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 LHCGRP22888 699 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 CSTF2P33240 577 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS41-213ENST00000485955 HUNKP57058 714 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 SLC8A3P57103 927 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 LY6DQ14210 128 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 CBWD6Q4V339 395 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 RILPL1Q5EBL4 403 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 CBWD3Q5JTY5 395 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 SLC35D3Q5M8T2 416 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 C11orf63Q6NUN7 778 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 NUP54Q7Z3B4 507 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 Q8N377 158 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 APPL2Q8NEU8 664 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 CFAP61Q8NHU2 1237 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 GATAD1Q8WUU5 269 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 PRPF31Q8WWY3 499 aaKnown RBP3.24□□□□□ -1.89
VPS41-213ENST00000485955 SYN2Q92777 582 aaPredicted RBP3.24□□□□□ -1.89
VPS41-213ENST00000485955 SLAMF9Q96A28 289 aa3.24□□□□□ -1.89
VPS41-213ENST00000485955 RSRC1Q96IZ7 334 aaKnown RBP3.24□□□□□ -1.89
VPS41-213ENST00000485955 SFXN2Q96NB2 322 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms