RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 FSHRP23945 695 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 PBX3P40426 434 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 ZNF280AP59817 542 aaPredicted RBP13.2□□□□□ -0.3
USP42-206ENST00000479544 GSTM4Q03013 218 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 SELPLGQ14242 412 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 RETSATQ6NUM9 610 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 ITPKCQ96DU7 683 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 DNAJC27Q9NZQ0 273 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 RBPJLQ9UBG7 517 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 CD84Q9UIB8 345 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 LSM7Q9UK45 103 aaKnown RBP13.2□□□□□ -0.3
USP42-206ENST00000479544 PCDHGA11Q9Y5H2 935 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 FHP07954 510 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 DCTP40126 519 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 CDK5R2Q13319 367 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 AKIRIN2Q53H80 203 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 TAPT1Q6NXT6 567 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 MBOAT1Q6ZNC8 495 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 C11orf65Q8NCR3 313 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 XAGE5Q8WWM1 108 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 PIGKQ92643 395 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 SLCO4A1Q96BD0 722 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 SDR39U1Q9NRG7 319 aaPredicted RBP13.2□□□□□ -0.3
USP42-206ENST00000479544 GTF2A1LQ9UNN4 478 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 CFL2Q9Y281 166 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 DYRK1BQ9Y463 629 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 BRWD1Q9NSI6 2320 aa13.2□□□□□ -0.3
USP42-206ENST00000479544 PLK4O00444 970 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 GABRDO14764 452 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 GPR39O43194 453 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 AOC2O75106 756 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 DCKP27707 260 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 HTR1EP28566 365 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 CDKN1CP49918 316 aaPredicted RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 ABRAXAS2Q15018 415 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 PON2Q15165 354 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 KIAA1614Q5VZ46 1190 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 Q6ZPB1 254 aaPredicted RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 AMIGO1Q86WK6 493 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 CHDHQ8NE62 594 aaPredicted RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 PIK3R3Q92569 461 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 ZFP3Q96NJ6 502 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 TMEM106CQ9BVX2 250 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 CHIAQ9BZP6 476 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 MMP27Q9H306 513 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 ATP13A3Q9H7F0 1226 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 MCUBQ9NWR8 336 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 GPR83Q9NYM4 423 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 NUFIP1Q9UHK0 495 aaKnown RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 DERAQ9Y315 318 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 ACTL7AQ9Y615 435 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 PRAMEF33A0A0G2JMD5 474 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 OR2AG2A6NM03 316 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 M0QX08 132 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 PRAMEF10O60809 474 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 PTNP21246 168 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 TGFBR1P36897 503 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 BUD31P41223 144 aaPredicted RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 MSANTD2Q6P1R3 559 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 GOLGA7Q7Z5G4 137 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 RBFAQ8N0V3 343 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 GRPEL2Q8TAA5 225 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 UBE2FQ969M7 185 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 NECTIN4Q96NY8 510 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 MMP28Q9H239 520 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 ADAM30Q9UKF2 790 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 FCF1Q9Y324 198 aaKnown RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 UGT2A1Q9Y4X1 527 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 SESN1Q9Y6P5 492 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 DDX5P17844 614 aaKnown RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 NOS3P29474 1203 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 MAGEA3P43357 314 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 STC1P52823 247 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 GNG2P59768 71 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 NFKB2Q00653 900 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 FOXM1Q08050 763 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 BHLHB9Q6PI77 547 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 PHC2Q8IXK0 858 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 CADM2Q8N3J6 435 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 IRGQQ8WZA9 623 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 SLC38A4Q969I6 547 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 HHIPL1Q96JK4 782 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 BTN2A3PQ96KV6 586 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 ZFYVE1Q9HBF4 777 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 ISPDA4D126 451 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 CD40LGP29965 261 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 HTR2BP41595 481 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 LEPRP48357 1165 aaKnown RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 MLLT6P55198 1093 aaPredicted RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 ZXDBP98169 803 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 WSCD2Q2TBF2 565 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 TNFAIP8L2Q6P589 184 aaPredicted RBP13.19□□□□□ -0.3
USP42-206ENST00000479544 COLGALT2Q8IYK4 626 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 PAAF1Q9BRP4 392 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 WACQ9BTA9 647 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 TTPALQ9BTX7 342 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 MED28Q9H204 178 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 OR51E2Q9H255 320 aa13.19□□□□□ -0.3
USP42-206ENST00000479544 C12orf71A8MTZ7 269 aa13.18□□□□□ -0.3
USP42-206ENST00000479544 KIAA0513O60268 411 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms