RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 CUTCQ9NTM9 273 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 INTS7Q9NVH2 962 aaKnown RBP11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IL1RAPL1Q9NZN1 696 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ANAPC5Q9UJX4 755 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GUCA1BQ9UMX6 200 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NTNG1Q9Y2I2 539 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ZKSCAN5Q9Y2L8 839 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PCDHGA10Q9Y5H3 936 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 HS3ST3B1Q9Y662 390 aa11.73□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 IGLV3-12A0A075B6K2 115 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OR2A25A4D2G3 310 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GOLGA6L6A8MZA4 724 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LDLRP01130 860 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ALPPP05187 535 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PIM1P11309 404 aaPredicted RBP11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ATP5DP30049 168 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MAGEA6P43360 314 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SESN2P58004 480 aaPredicted RBP11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 YBX1P67809 324 aaKnown RBP11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CDK16Q00536 496 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 Q0VFX4 171 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GRM7Q14831 915 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RPS6KA1Q15418 735 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 WASHC2DQ5SRD0 308 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PRAMEF13Q5VWM6 474 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FRMPD2BQ6IN97 320 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FBXO42Q6P3S6 717 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LRRC8BQ6P9F7 803 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 RNF44Q7L0R7 432 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 DTWD1Q8N5C7 304 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CISD2Q8N5K1 135 aaKnown RBP11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CCDC89Q8N998 374 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OR2L3Q8NG85 312 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LPGAT1Q92604 370 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MFSD3Q96ES6 412 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SLC29A3Q9BZD2 475 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TSGA10Q9BZW7 698 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GNPTGQ9UJJ9 305 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ERRFI1Q9UJM3 462 aaPredicted RBP11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FBXL4Q9UKA2 621 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SLC39A10Q9ULF5 831 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TTC7AQ9ULT0 858 aaPredicted RBP11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CSAG2Q9Y5P2 127 aa11.72□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CREBBPQ92793 2442 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LOC105369274A0A096LPK9 316 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LOC102723532A0A0G2JNH3 316 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 A0A1W2PQ72 361 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TCRBV7S3A2A0A539 114 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 KRT87PA6NCN2 255 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 AP3B1O00203 1094 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NRP2O60462 931 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TPSB2P20231 275 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PSMB5P28074 263 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CCNFP41002 786 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OR1D4P47884 311 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 EMP3P54852 163 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FASTKQ14296 549 aaKnown RBP11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TMED2Q15363 201 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NR6A1Q15406 480 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TPSAB1Q15661 275 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PRTGQ2VWP7 1150 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 FAM214AQ32MH5 1076 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ARMC3Q5W041 872 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ATG9BQ674R7 924 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 PTRHD1Q6GMV3 140 aaKnown RBP11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OTOAQ7RTW8 1153 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TAX1BP1Q86VP1 789 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 LURAP1LQ8IV03 231 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OR4N4Q8N0Y3 316 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ZADH2Q8N4Q0 377 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 ARHGEF39Q8N4T4 335 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SPC24Q8NBT2 197 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 OR11G2Q8NGC1 345 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 TCF12Q99081 682 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SELENOSQ9BQE4 189 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MESP1Q9BRJ9 268 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SYNPO2LQ9H987 977 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SEMA3GQ9NS98 782 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 BFARQ9NZS9 450 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 GALPQ9UBC7 116 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 CTSFQ9UBX1 484 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 NXT1Q9UKK6 140 aaKnown RBP11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SOX13Q9UN79 622 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 MRFAP1Q9Y605 127 aa11.71□□□□□ -0.53
MSH5-SAPCD1-205ENST00000476085 SCN2AQ99250 2005 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 IGKV1-8A0A0C4DH67 115 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 HYKKA2RU49 373 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PSIP1O75475 530 aaKnown RBP11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 NDUFS3O75489 264 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 VAPBO95292 243 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 MGAT1P26572 445 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 BDKRB1P46663 353 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 KCNJ1P48048 391 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 VSX2P58304 361 aaPredicted RBP11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 RELAQ04206 551 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TTC23LQ6PF05 361 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PRR7Q8TB68 274 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 PPP4R1Q8TF05 950 aa11.7□□□□□ -0.54
MSH5-SAPCD1-205ENST00000476085 TM9SF4Q92544 642 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms