RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 XAB2Q9HCS7 855 aaKnown RBP13.52□□□□□ -0.25
UPF3A-204ENST00000475218 INTS10Q9NVR2 710 aaKnown RBP13.52□□□□□ -0.25
UPF3A-204ENST00000475218 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.52□□□□□ -0.25
UPF3A-204ENST00000475218 PTRH2Q9Y3E5 179 aaKnown RBP13.52□□□□□ -0.25
UPF3A-204ENST00000475218 LOC105369274A0A096LPK9 316 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 LOC102723532A0A0G2JNH3 316 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 FITM1A5D6W6 292 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 USP27XA6NNY8 438 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 TARM1B6A8C7 271 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 CHRM3P20309 590 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 CCNFP41002 786 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 CD97P48960 835 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 FNTAP49354 379 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 PGDP52209 483 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 SARNPP82979 210 aaKnown RBP13.51□□□□□ -0.25
UPF3A-204ENST00000475218 MSS51Q4VC12 460 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 CYHR1Q6ZMK1 362 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 OR4N4Q8N0Y3 316 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 Q8NA96 180 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 ANP32BQ92688 251 aaKnown RBP13.51□□□□□ -0.25
UPF3A-204ENST00000475218 TRIM44Q96DX7 344 aaPredicted RBP13.51□□□□□ -0.25
UPF3A-204ENST00000475218 NDC1Q9BTX1 674 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 TRMT1Q9NXH9 659 aaKnown RBP13.51□□□□□ -0.25
UPF3A-204ENST00000475218 SPATA7Q9P0W8 599 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 SAMD15Q9P1V8 674 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 IFT80Q9P2H3 777 aaPredicted RBP13.51□□□□□ -0.25
UPF3A-204ENST00000475218 SHANK1Q9Y566 2161 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 HEATR5BQ9P2D3 2071 aa13.51□□□□□ -0.25
UPF3A-204ENST00000475218 MAGEB16A2A368 324 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 OR2A25A4D2G3 310 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 A6NL46 340 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 BANF1O75531 89 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 USP1O94782 785 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 SORBS2O94875 1100 aaKnown RBP13.5□□□□□ -0.25
UPF3A-204ENST00000475218 PAMP19021 973 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 IVDP26440 423 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 MPP1Q00013 466 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 CUL1Q13616 776 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 SSPNQ14714 243 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 FBXO42Q6P3S6 717 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 SUSD1Q6UWL2 747 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 TTLL10Q6ZVT0 673 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 MED25Q71SY5 747 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 RNF44Q7L0R7 432 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 OR9A1PQ8NGU1 263 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 GSDMBQ8TAX9 411 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 ZUFSPQ96AP4 578 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 PKP4Q99569 1192 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 MESP1Q9BRJ9 268 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 TXLNGQ9NUQ3 528 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 A0A1B0GX78 115 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 CES2O00748 559 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 DSCR3O14972 297 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 NRDCO43847 1150 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 HAUS5O94927 633 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 FKBP9O95302 570 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 RAPSNQ13702 412 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 TTC23LQ6PF05 361 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 OVCH1Q7RTY7 1134 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 IGDCC3Q8IVU1 814 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 RBMXL3Q8N7X1 1067 aaKnown RBP13.5□□□□□ -0.25
UPF3A-204ENST00000475218 TMEM102Q8N9M5 508 aaPredicted RBP13.5□□□□□ -0.25
UPF3A-204ENST00000475218 CD200R1Q8TD46 325 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 NAP1L3Q99457 506 aaPredicted RBP13.5□□□□□ -0.25
UPF3A-204ENST00000475218 SPSB2Q99619 263 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 SMAD5Q99717 465 aaKnown RBP13.5□□□□□ -0.25
UPF3A-204ENST00000475218 SELENOSQ9BQE4 189 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 WDR83Q9BRX9 315 aaKnown RBP13.5□□□□□ -0.25
UPF3A-204ENST00000475218 ACAT2Q9BWD1 397 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 DDX47Q9H0S4 455 aaKnown RBP13.5□□□□□ -0.25
UPF3A-204ENST00000475218 CUTCQ9NTM9 273 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 INTS7Q9NVH2 962 aaKnown RBP13.5□□□□□ -0.25
UPF3A-204ENST00000475218 STOX2Q9P2F5 926 aaPredicted RBP13.5□□□□□ -0.25
UPF3A-204ENST00000475218 PADI2Q9Y2J8 665 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 FAM169AQ9Y6X4 670 aa13.5□□□□□ -0.25
UPF3A-204ENST00000475218 DOPEY2Q9Y3R5 2298 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 ESPNB1AK53 854 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 FANCGO15287 622 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 ALAS2P22557 587 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 GABRB3P28472 473 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 FOLR3P41439 243 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 OR1D4P47884 311 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 VSX2P58304 361 aaPredicted RBP13.49□□□□□ -0.25
UPF3A-204ENST00000475218 SNRPNP63162 240 aaKnown RBP13.49□□□□□ -0.25
UPF3A-204ENST00000475218 NKG7Q16617 165 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 LONRF1Q17RB8 773 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 ZC3H12BQ5HYM0 836 aaKnown RBP13.49□□□□□ -0.25
UPF3A-204ENST00000475218 DCAF10Q5QP82 559 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 RAB43Q86YS6 212 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 PPIL6Q8IXY8 311 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 LRRC56Q8IYG6 542 aaPredicted RBP13.49□□□□□ -0.25
UPF3A-204ENST00000475218 ARHGEF39Q8N4T4 335 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 METTL27Q8N6F8 245 aaPredicted RBP13.49□□□□□ -0.25
UPF3A-204ENST00000475218 ZNF480Q8WV37 535 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 ASB11Q8WXH4 323 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 DLG3Q92796 817 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 KCNJ9Q92806 393 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 SLCO2A1Q92959 643 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 FKBP10Q96AY3 582 aa13.49□□□□□ -0.25
UPF3A-204ENST00000475218 C10orf90Q96M02 699 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms