RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 H2AFJQ9BTM1 129 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 TRIM54Q9BYV2 358 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 PSAT1Q9Y617 370 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 ATRXP46100 2492 aa13.68□□□□□ -0.22
VAMP4-203ENST00000474047 FAM95CA0A1B0GW59 222 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 TARM1B6A8C7 271 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 MEN1O00255 615 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 SLC16A8O95907 504 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 ATXN8OSP0DMR3 200 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 MAGEA4P43358 317 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 TLDC1Q6P9B6 456 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 FAM199XQ6PEV8 388 aaPredicted RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 ZC3HC1Q86WB0 502 aaKnown RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 MCATQ8IVS2 390 aaKnown RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 CTAGE3PQ8IX95 158 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 MMGT1Q8N4V1 131 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 DNAJC22Q8N4W6 341 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 OR2L3Q8NG85 312 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 NDC1Q9BTX1 674 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 SLC12A9Q9BXP2 914 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 TWSG1Q9GZX9 223 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 SPRTNQ9H040 489 aaPredicted RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 MRPS30Q9NP92 439 aaKnown RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 TXLNGQ9NUQ3 528 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 UTP6Q9NYH9 597 aaKnown RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 EURLQ9NYK6 297 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 CELSR3Q9NYQ7 3312 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 PCM1Q15154 2024 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 C21orf140B9A014 251 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 ATXN7O15265 892 aaPredicted RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 NKX2-8O15522 239 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 PRICKLE3O43900 615 aaPredicted RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 CCNDBP1O95273 360 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 FDXRP22570 491 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 TIAL1Q01085 375 aaKnown RBP eCLIP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 GPS2Q13227 327 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 SP140Q13342 867 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 CEP128Q6ZU80 1094 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 ZNF655Q8N720 491 aaPredicted RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 PPFIBP2Q8ND30 876 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 OR2A1Q8NGT9 310 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 ZNF480Q8WV37 535 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 CCDC138Q96M89 665 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 DPH7Q9BTV6 452 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 GPR87Q9BY21 358 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 PHACTR1Q9C0D0 580 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 PARVBQ9HBI1 364 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 MTRF1LQ9UGC7 380 aaKnown RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 TAC3Q9UHF0 121 aa13.67□□□□□ -0.22
VAMP4-203ENST00000474047 MRPS18BQ9Y676 258 aaKnown RBP13.67□□□□□ -0.22
VAMP4-203ENST00000474047 SPTBP11277 2137 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 CHD6Q8TD26 2715 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 SLC16A5O15375 505 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 ZSCAN9O15535 394 aaPredicted RBP13.66□□□□□ -0.22
VAMP4-203ENST00000474047 SNRNP200O75643 2136 aaKnown RBP13.66□□□□□ -0.22
VAMP4-203ENST00000474047 PIAS1O75925 651 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 ITGB2P05107 769 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 ERV3-1Q14264 604 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 FCRL6Q6DN72 434 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 ZDHHC24Q6UX98 284 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 DSELQ8IZU8 1212 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 CEP112Q8N8E3 955 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 SLC38A9Q8NBW4 561 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 IFT81Q8WYA0 676 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 SLC39A7Q92504 469 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 EXTL1Q92935 676 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 ALKBH8Q96BT7 664 aaKnown RBP13.66□□□□□ -0.22
VAMP4-203ENST00000474047 LRFN5Q96NI6 719 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 CATSPER2Q96P56 530 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 OLFM1Q99784 485 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 SELENOSQ9BQE4 189 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 CHST8Q9H2A9 424 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 RHOJQ9H4E5 214 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 ADAMTS6Q9UKP5 1117 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 SRPK3Q9UPE1 567 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 ITPR1Q14643 2758 aa13.66□□□□□ -0.22
VAMP4-203ENST00000474047 A0A1W2PPV9 198 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 TCRBV9S1A1TA0A576 114 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 C9J4A7 227 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 ERGP11308 486 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 ALAS2P22557 587 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 F8A1P23610 371 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 STX2P32856 288 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 CDC20Q12834 499 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 PTCHD3Q3KNS1 767 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 GLE1Q53GS7 698 aaKnown RBP13.65□□□□□ -0.22
VAMP4-203ENST00000474047 SOWAHCQ53LP3 525 aaPredicted RBP13.65□□□□□ -0.22
VAMP4-203ENST00000474047 TCTE1Q5JU00 501 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 ADCK2Q7Z695 626 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 NKAPQ8N5F7 415 aaKnown RBP13.65□□□□□ -0.22
VAMP4-203ENST00000474047 TTC29Q8NA56 475 aaPredicted RBP13.65□□□□□ -0.22
VAMP4-203ENST00000474047 LSM14AQ8ND56 463 aaKnown RBP13.65□□□□□ -0.22
VAMP4-203ENST00000474047 DLG3Q92796 817 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 TSPAN17Q96FV3 270 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 MED8Q96G25 268 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 CPNE1Q99829 537 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 DPH2Q9BQC3 489 aaPredicted RBP13.65□□□□□ -0.22
VAMP4-203ENST00000474047 AKIRIN1Q9H9L7 192 aaPredicted RBP13.65□□□□□ -0.22
VAMP4-203ENST00000474047 PCMTD2Q9NV79 361 aa13.65□□□□□ -0.22
VAMP4-203ENST00000474047 NDOR1Q9UHB4 597 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms