RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 GADD45AP24522 165 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 CLCNKAP51800 687 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 GBE1Q04446 702 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 GAD2Q05329 585 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 LAPTM4BQ86VI4 370 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TMEM126BQ8IUX1 230 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TBC1D21Q8IYX1 336 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TMEM203Q969S6 136 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 ZBED6CLQ96FA7 236 aaPredicted RBP12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 RBM4BQ9BQ04 359 aaKnown RBP12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 RBM4Q9BWF3 364 aaKnown RBP12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 EIF3KQ9UBQ5 218 aaKnown RBP12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 C13orf42A0A1B0GVH6 325 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 A0A1B0GVM2 712 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TCAF2A6NFQ2 919 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 CD40LGP29965 261 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 ARPC4P59998 168 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TOP6BLQ8N6T0 577 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 SP140LQ9H930 580 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 PNPLA3Q9NST1 481 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 LYARQ9NX58 379 aaKnown RBP12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 OR4F21O95013 312 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 GADD45GO95257 159 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 GBAP04062 536 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TMEM11P17152 192 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NTRK3Q16288 839 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 HGSNATQ68CP4 663 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TMED4Q7Z7H5 227 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 CREG2Q8IUH2 290 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TMEM151BQ8IW70 566 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TCEANCQ8N8B7 351 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 SMARCD2Q92925 531 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 CSPG4P5Q96PW8 444 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 HIPK2Q9H2X6 1198 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 IL36AQ9UHA7 158 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 SLC3A1Q07837 685 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 PHOSPHO1Q8TCT1 267 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NUS1Q96E22 293 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 DMRTB1Q96MA1 342 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NELFAQ9H3P2 528 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 GSKIPQ9P0R6 139 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 KCNS2Q9ULS6 477 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 PCDHGC3Q9UN70 934 aa12.97□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 A0A1B0GVT2 93 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 SMIM35A0A1B0GVV1 85 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 SPATA31C2B4DYI2 1134 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TOR1BO14657 336 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 CST3P01034 146 aaPredicted RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 ALPPP05187 535 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 PVALBP20472 110 aaPredicted RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TMEM35AQ53FP2 167 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 ZNF311Q5JNZ3 666 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TMPPEQ6ZT21 453 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NLGN4YQ8NFZ3 816 aaPredicted RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 KCTD15Q96SI1 283 aaPredicted RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 PKP4Q99569 1192 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 GPATCH1Q9BRR8 931 aaKnown RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 C12orf65Q9H3J6 166 aaKnown RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 DPEP3Q9H4B8 488 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 SDHAF3Q9NRP4 125 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 PLAGL1Q9UM63 463 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 ZNF3P17036 446 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 DNAJA1P31689 397 aaKnown RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 LAPTM5Q13571 262 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NKAPLQ5M9Q1 402 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 PLCZ1Q86YW0 608 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 CPT1BQ92523 772 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 DKKL1Q9UK85 242 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TBX18O95935 607 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 TTKP33981 857 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 GPR153Q6NV75 609 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 ZNF782Q6ZMW2 699 aaPredicted RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 WDR26Q9H7D7 661 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 HEBP2Q9Y5Z4 205 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 hCG_1807616A0A1W2PRN6 198 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NEMP2A6NFY4 417 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NPIPA5E9PKD4 350 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NMBRP28336 390 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 CCR8P51685 355 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 DEFA5Q01523 94 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 RPL6Q02878 288 aaKnown RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 PCBP1Q15365 356 aaKnown RBP eCLIP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 PRPF38BQ5VTL8 546 aaKnown RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 DPY19L4Q7Z388 723 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 OR6N1Q8NGY5 312 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NPLQ9BXD5 320 aaPredicted RBP12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 NPIPA1Q9UND3 350 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 MAU2Q9Y6X3 613 aa12.96□□□□□ -0.33
NPHP3-ACAD11-201ENST00000471702 SMIM28A0A1B0GU29 152 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 GRXCR1A8MXD5 290 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MAGEB17A8MXT2 336 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 ADRA1BP35368 520 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 GABRB2P47870 512 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 PRKCZQ05513 592 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 DBF4BQ8NFT6 615 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 SH3RF2Q8TEC5 729 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 LPIN3Q9BQK8 851 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 OTOFQ9HC10 1997 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 MEIS2O14770 477 aa12.96□□□□□ -0.34
NPHP3-ACAD11-201ENST00000471702 PSMD10O75832 226 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms