RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 EIF3BP55884 814 aaKnown RBP20.17■□□□□ 0.82
COL9A3-207ENST00000467819 BASP1P80723 227 aaKnown RBP20.17■□□□□ 0.82
COL9A3-207ENST00000467819 HIF1AQ16665 826 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 PRAMEF13Q5VWM6 474 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 CNSTQ6PJW8 725 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 Q6ZS92 163 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 OTOAQ7RTW8 1153 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 TREX1Q9NSU2 369 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 PCDHGA10Q9Y5H3 936 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 HS3ST3B1Q9Y662 390 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 MAU2Q9Y6X3 613 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 ITPR2Q14571 2701 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 ZGRF1Q86YA3 2104 aa20.17■□□□□ 0.82
COL9A3-207ENST00000467819 ANKUB1A6NFN9 424 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 NRP2O60462 931 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 ONECUT2O95948 504 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 ELOAQ14241 798 aaKnown RBP20.16■□□□□ 0.82
COL9A3-207ENST00000467819 RBBP7Q16576 425 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 YOD1Q5VVQ6 348 aaPredicted RBP20.16■□□□□ 0.82
COL9A3-207ENST00000467819 GAS2L3Q86XJ1 694 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 RAB42Q8N4Z0 105 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 ZUFSPQ96AP4 578 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 NACC2Q96BF6 587 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 ZNF285Q96NJ3 590 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 WDR77Q9BQA1 342 aaPredicted RBP20.16■□□□□ 0.82
COL9A3-207ENST00000467819 SLC26A1Q9H2B4 701 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 EIF2B3Q9NR50 452 aaKnown RBP20.16■□□□□ 0.82
COL9A3-207ENST00000467819 FAM169AQ9Y6X4 670 aa20.16■□□□□ 0.82
COL9A3-207ENST00000467819 POLEQ07864 2286 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 TARM1B6A8C7 271 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 KPNA5O15131 536 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 FKBP9O95302 570 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 RPS3P23396 243 aaKnown RBP eCLIP20.15■□□□□ 0.822e-14■■■□□ 15.9
COL9A3-207ENST00000467819 SIX1Q15475 284 aaPredicted RBP20.15■□□□□ 0.82
COL9A3-207ENST00000467819 FAM214AQ32MH5 1076 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 TUBB8Q3ZCM7 444 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 CRB2Q5IJ48 1285 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 WASHC2DQ5SRD0 308 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 IRAK1BP1Q5VVH5 260 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 FRMPD2BQ6IN97 320 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 KIRREL2Q6UWL6 708 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 CES3Q6UWW8 571 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 LRRC6Q86X45 466 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 PARP9Q8IXQ6 854 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 MPP5Q8N3R9 675 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 FOPNLQ96NB1 174 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 TSGA10Q9BZW7 698 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 IL22Q9GZX6 179 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 MRM3Q9HC36 420 aaKnown RBP20.15■□□□□ 0.82
COL9A3-207ENST00000467819 BFARQ9NZS9 450 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 NXT1Q9UKK6 140 aaKnown RBP20.15■□□□□ 0.82
COL9A3-207ENST00000467819 NOVA2Q9UNW9 492 aaKnown RBP20.15■□□□□ 0.82
COL9A3-207ENST00000467819 MRFAP1Q9Y605 127 aa20.15■□□□□ 0.82
COL9A3-207ENST00000467819 A0A0J9YVX5 310 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 FITM1A5D6W6 292 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 MED26O95402 600 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 LDLRP01130 860 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 MGAT1P26572 445 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 COL8A1P27658 744 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 RPS6KA1Q15418 735 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 KCTD19Q17RG1 926 aaPredicted RBP20.14■□□□□ 0.81
COL9A3-207ENST00000467819 CTSL3PQ5NE16 218 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 AGAP7PQ5VUJ5 663 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 GSTA5Q7RTV2 222 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 PRSS58Q8IYP2 241 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 OR2L3Q8NG85 312 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 PPP4R1Q8TF05 950 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 UBE2Q2Q8WVN8 375 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 FAM136AQ96C01 138 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 AGAP4Q96P64 663 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 ZC3H7BQ9UGR2 993 aaKnown RBP20.14■□□□□ 0.81
COL9A3-207ENST00000467819 SLC5A6Q9Y289 635 aa20.14■□□□□ 0.81
COL9A3-207ENST00000467819 CRYBG3Q68DQ2 2970 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 MYO9AB2RTY4 2548 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 A0A1W2PPV9 198 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 HYKKA2RU49 373 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 GOLGA8KD6RF30 607 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 GOLGA8TH3BQL2 631 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 SRPX2O60687 465 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-207ENST00000467819 NIPSNAP2O75323 286 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 VAPBO95292 243 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 EIF2S1P05198 315 aaKnown RBP20.13■□□□□ 0.81
COL9A3-207ENST00000467819 CDC25BP30305 580 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 FMO4P31512 558 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 CCNFP41002 786 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 NPY2RP49146 381 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 YBX1P67809 324 aaKnown RBP20.13■□□□□ 0.81
COL9A3-207ENST00000467819 FASTKQ14296 549 aaKnown RBP20.13■□□□□ 0.81
COL9A3-207ENST00000467819 CCNG2Q16589 344 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 MEI1Q5TIA1 1274 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 MAMDC2Q7Z304 686 aaPredicted RBP20.13■□□□□ 0.81
COL9A3-207ENST00000467819 OR11G2Q8NGC1 345 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 HMGCLL1Q8TB92 370 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 MFSD3Q96ES6 412 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 CNDP1Q96KN2 507 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 C5orf34Q96MH7 638 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 MESP1Q9BRJ9 268 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 CRB3Q9BUF7 120 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 ACAT2Q9BWD1 397 aa20.13■□□□□ 0.81
COL9A3-207ENST00000467819 ZNF304Q9HCX3 659 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms