RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 ARL15Q9NXU5 204 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 TDRKHQ9Y2W6 561 aaKnown RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 TCRBV21S2A2A0A5A6 115 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 LCHNA4D1U4 455 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 A8MUI8 341 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 FAM47E-STBD1D6RA91 191 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 MUSKO15146 869 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 SLC31A1O15431 190 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 SGTAO43765 313 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 DFNA5O60443 496 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 TMCC2O75069 709 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 AP2A2O94973 939 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 PABPC4LP0CB38 370 aaKnown RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 MYL12AP19105 171 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 CDK9P50750 372 aaKnown RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 EPHA5P54756 1037 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 PHC1P78364 1004 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 SCN1BQ07699 218 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 LMAN2Q12907 356 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 ELOCQ15369 112 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 TMEM53Q6P2H8 277 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 PAGE2Q7Z2X7 111 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 SATL1Q86VE3 508 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 CEP97Q8IW35 865 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 CCDC28AQ8IWP9 274 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 CBARPQ8N350 705 aaPredicted RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 GALNT6Q8NCL4 622 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 RBM15BQ8NDT2 890 aaKnown RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 TMIEQ8NEW7 156 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 RPL10LQ96L21 214 aaKnown RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 SORT1Q99523 831 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 ZNF358Q9NW07 568 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 OPTCQ9UBM4 332 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 NDOR1Q9UHB4 597 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 ASF1AQ9Y294 204 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 HCN4Q9Y3Q4 1203 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 PCP4L1A6NKN8 68 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 MYL12BO14950 172 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 UMPSP11172 480 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 ATF4P18848 351 aaPredicted RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 MAT2AP31153 395 aaKnown RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 FMO4P31512 558 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 VIPR2P41587 438 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 CCNG1P51959 295 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 NTHL1P78549 312 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 ZNF423Q2M1K9 1284 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 SPDYE7PQ495Y7 208 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 ARL13AQ5H913 290 aaPredicted RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 CDC73Q6P1J9 531 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 TMC8Q8IU68 726 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 PLPP6Q8IY26 295 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 GJD3Q8N144 294 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 OR13C4Q8NGS5 318 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 ZNF420Q8TAQ5 688 aaPredicted RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 RAD51AP1Q96B01 352 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 L3HYPDHQ96EM0 354 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 UBXN10Q96LJ8 280 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 Q96MT0 163 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 HOPXQ9BPY8 73 aaPredicted RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 CCDC106Q9BWC9 280 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 SLC46A2Q9BY10 475 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 PCDH12Q9NPG4 1184 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 GPN3Q9UHW5 284 aaPredicted RBP7.48□□□□□ -1.21
USP54-210ENST00000466048 PCDHGC4Q9Y5F7 938 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 STON1Q9Y6Q2 735 aa7.48□□□□□ -1.21
USP54-210ENST00000466048 TET1Q8NFU7 2136 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 ANKDD1BA6NHY2 528 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 PSMD11O00231 422 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 TOR1BO14657 336 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 KERAO60938 352 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 PRKD3O94806 890 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 MLYCDO95822 493 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 GUCA1CO95843 209 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 RPS3P23396 243 aaKnown RBP eCLIP7.47□□□□□ -1.21
USP54-210ENST00000466048 ARSDP51689 593 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 ABATP80404 500 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 HSPA14Q0VDF9 509 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 CCNYL2Q5T2Q4 361 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 BTN2A1Q7KYR7 527 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 TMEM150AQ86TG1 271 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 PROSER1Q86XN7 944 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 KCNJ9Q92806 393 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 FAM136AQ96C01 138 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 MYEOVQ96EZ4 313 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 SEPHS2Q99611 448 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 SLC38A3Q99624 504 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 CADM1Q9BY67 442 aaKnown RBP7.47□□□□□ -1.21
USP54-210ENST00000466048 ALG9Q9H6U8 611 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 SIT1Q9Y3P8 196 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 COL4A6Q14031 1691 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 GSAPA4D1B5 854 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 FAM220BPB1ANY3 271 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 KMOO15229 486 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 EPN2O95208 641 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 TOP3BO95985 862 aaKnown RBP7.47□□□□□ -1.21
USP54-210ENST00000466048 PCCBP05166 539 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 ENO2P09104 434 aaPredicted RBP7.47□□□□□ -1.21
USP54-210ENST00000466048 PIM1P11309 404 aaPredicted RBP7.47□□□□□ -1.21
USP54-210ENST00000466048 HMGCLP35914 325 aa7.47□□□□□ -1.21
USP54-210ENST00000466048 PKNOX1P55347 436 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms