RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 DDX28Q9NUL7 540 aaKnown RBP19.23■□□□□ 0.67
SDF4-205ENST00000465727 FAM105AQ9NUU6 356 aa19.23■□□□□ 0.67
SDF4-205ENST00000465727 FKBP14Q9NWM8 211 aa19.23■□□□□ 0.67
SDF4-205ENST00000465727 CFL2Q9Y281 166 aa19.23■□□□□ 0.67
SDF4-205ENST00000465727 KLK4Q9Y5K2 254 aa19.23■□□□□ 0.67
SDF4-205ENST00000465727 TRIP12Q14669 1992 aaPredicted RBP19.22■□□□□ 0.67
SDF4-205ENST00000465727 CLCA1A8K7I4 914 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 PLK4O00444 970 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 CAPN5O15484 640 aaPredicted RBP19.22■□□□□ 0.67
SDF4-205ENST00000465727 TREHO43280 583 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 TPD52L2O43399 206 aaKnown RBP19.22■□□□□ 0.67
SDF4-205ENST00000465727 OR1I1O60431 355 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 TRAPPC2P0DI81 140 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 TRAPPC2BP0DI82 140 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 MYCLP1P12525 358 aaPredicted RBP19.22■□□□□ 0.67
SDF4-205ENST00000465727 MAGP20916 626 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 PAX3P23760 479 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 PTPN6P29350 595 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 S100A3P33764 101 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 CDKN1CP49918 316 aaPredicted RBP19.22■□□□□ 0.67
SDF4-205ENST00000465727 CLCN7P51798 805 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 METTL2BQ6P1Q9 378 aaKnown RBP19.22■□□□□ 0.67
SDF4-205ENST00000465727 SUSD1Q6UWL2 747 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 STK40Q8N2I9 435 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 FLCNQ8NFG4 579 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 GPRC5AQ8NFJ5 357 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 MDGA1Q8NFP4 955 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 OR10Q1Q8NGQ4 319 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 ZNF675Q8TD23 568 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 RMDN1Q96DB5 314 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 PDFQ9HBH1 243 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 MIOSQ9NXC5 875 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 QPCTLQ9NXS2 382 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 TRPS1Q9UHF7 1281 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 DHRS7Q9Y394 339 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 PCDHGA6Q9Y5G7 932 aa19.22■□□□□ 0.67
SDF4-205ENST00000465727 ARL5CA6NH57 179 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 OR1E1P30953 314 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 MC4RP32245 332 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 PIK3CBP42338 1070 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 PXNP49023 591 aaPredicted RBP19.21■□□□□ 0.67
SDF4-205ENST00000465727 AFF1P51825 1210 aaKnown RBP19.21■□□□□ 0.67
SDF4-205ENST00000465727 CLDN8P56748 225 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 FAM171A1Q5VUB5 890 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 ERICH5Q6P6B1 374 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 MSANTD1Q6ZTZ1 278 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 NLGN4XQ8N0W4 816 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 COL21A1Q96P44 957 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 DEPDC7Q96QD5 511 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 MIR1-1HGQ9H1L0 117 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 AASDHPPTQ9NRN7 309 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 TRMT13Q9NUP7 481 aaKnown RBP19.21■□□□□ 0.67
SDF4-205ENST00000465727 SPASTQ9UBP0 616 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 AGO1Q9UL18 857 aaKnown RBP19.21■□□□□ 0.67
SDF4-205ENST00000465727 SCML2Q9UQR0 700 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 BTBD3Q9Y2F9 522 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 M0QZQ0 153 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 C9P02748 559 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 BCKDHAP12694 445 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 TIE1P35590 1138 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 ACVRL1P37023 503 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 RPS14P62263 151 aaKnown RBP19.21■□□□□ 0.67
SDF4-205ENST00000465727 HMGCS1Q01581 520 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 GPR50Q13585 617 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 C18orf21Q32NC0 220 aaPredicted RBP19.21■□□□□ 0.67
SDF4-205ENST00000465727 TIMM50Q3ZCQ8 353 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 OVOS1Q6IE37 1185 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 RGL4Q8IZJ4 473 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 DNAJC22Q8N4W6 341 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 GALNT6Q8NCL4 622 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 GRPEL2Q8TAA5 225 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 PPP1R13LQ8WUF5 828 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 TRIM63Q969Q1 353 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 CRELD1Q96HD1 420 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 EPYCQ99645 322 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 PAAF1Q9BRP4 392 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 ZNF408Q9H9D4 720 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 THUMPD1Q9NXG2 353 aaKnown RBP19.21■□□□□ 0.67
SDF4-205ENST00000465727 CRNNQ9UBG3 495 aaPredicted RBP19.21■□□□□ 0.67
SDF4-205ENST00000465727 ZNF490Q9ULM2 529 aaPredicted RBP19.21■□□□□ 0.67
SDF4-205ENST00000465727 PLXNA3P51805 1871 aa19.21■□□□□ 0.67
SDF4-205ENST00000465727 GPR182O15218 404 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 UGT2B17O75795 530 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 EBLN1P0CF75 366 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 CHRNB1P11230 501 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 C21orf33P30042 268 aaPredicted RBP19.2■□□□□ 0.66
SDF4-205ENST00000465727 VLDLRP98155 873 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 E2F2Q14209 437 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 EIF4HQ15056 248 aaKnown RBP19.2■□□□□ 0.66
SDF4-205ENST00000465727 ZSWIM9Q86XI8 627 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 ST13P5Q8NFI4 369 aaPredicted RBP19.2■□□□□ 0.66
SDF4-205ENST00000465727 USP7Q93009 1102 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 UBE2FQ969M7 185 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 TESCQ96BS2 214 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 NTMT1Q9BV86 223 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 SLA2Q9H6Q3 261 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 SARS2Q9NP81 518 aaKnown RBP19.2■□□□□ 0.66
SDF4-205ENST00000465727 CAB39Q9Y376 341 aaPredicted RBP19.2■□□□□ 0.66
SDF4-205ENST00000465727 PCDHB1Q9Y5F3 818 aa19.2■□□□□ 0.66
SDF4-205ENST00000465727 GREB1Q4ZG55 1949 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms