RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 EPB41L4BQ9H329 900 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 MUC13Q9H3R2 512 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 XKR8Q9H6D3 395 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 RAPGEFL1Q9UHV5 662 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 SCML1Q9UN30 329 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 SH3GLB1Q9Y371 365 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 U3KQV3 271 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 TUBGCP6Q96RT7 1819 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 ATXN2Q99700 1313 aaKnown RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 A0A1W2PRB8 838 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 A8MU76 341 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 DNAJA2O60884 412 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 SLC25A12O75746 678 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 POLR2CP19387 275 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 ITGB7P26010 798 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 SHMT2P34897 504 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 GJA4P35212 333 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 GMPRP36959 345 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 MAGEA6P43360 314 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 MPP2Q14168 576 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 MRPL58Q14197 206 aaKnown RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 TYW3Q6IPR3 259 aaKnown RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 GPR65Q8IYL9 337 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 DNASE1L2Q92874 299 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 OR51B5Q9H339 312 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 ZNF282Q9UDV7 671 aaPredicted RBP7.21□□□□□ -1.25
SYNE1-213ENST00000448038 MYRFQ9Y2G1 1151 aa7.21□□□□□ -1.25
SYNE1-213ENST00000448038 CCDC189A1A4V9 331 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 SLC16A5O15375 505 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 TNFAIP8O95379 198 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 MATN4O95460 622 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 PSMB9P28065 219 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 HOXA9P31269 272 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 UGT2B15P54855 530 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 NUP107P57740 925 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 MTPNP58546 118 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 RPS13P62277 151 aaKnown RBP7.21□□□□□ -1.26
SYNE1-213ENST00000448038 ALG11Q2TAA5 492 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 CCSAPQ6IQ19 270 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-213ENST00000448038 EPGNQ6UW88 154 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 MFSD6LQ8IWD5 586 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 PQLC1Q8N2U9 271 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 PNPLA1Q8N8W4 532 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 MDGA1Q8NFP4 955 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 ARRDC2Q8TBH0 407 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 RIMKLBQ9ULI2 386 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 WASH3PC4AMC7 463 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 AURKAO14965 403 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF217O75362 1048 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 CD72P21854 359 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 SGSHP51688 502 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 BTN3A2P78410 334 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 LARS2Q15031 903 aaKnown RBP7.21□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF542PQ5EBM4 170 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 DGKKQ5KSL6 1271 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 ANKRD54Q6NXT1 300 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 RNF44Q7L0R7 432 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 VN1R5Q7Z5H4 357 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 TDHQ8IZJ6 230 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 Q8N9G6 341 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-213ENST00000448038 FAM156AQ8NDB6 213 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 TSACCQ96A04 125 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-213ENST00000448038 HEBP1Q9NRV9 189 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 TRPS1Q9UHF7 1281 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 LYVE1Q9Y5Y7 322 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 H7BY64 318 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 PRAMEF12O95522 483 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 HOXB6P17509 224 aaKnown RBP7.21□□□□□ -1.26
SYNE1-213ENST00000448038 JUNDP17535 347 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 MPIP34949 423 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 NCBP2P52298 156 aaKnown RBP eCLIP7.21□□□□□ -1.26
SYNE1-213ENST00000448038 CDC42P60953 191 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 MTAPQ13126 283 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 GRIN2CQ14957 1233 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 TOR1AIP1Q5JTV8 583 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 EMC10Q5UCC4 262 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 CBARPQ8N350 705 aaPredicted RBP7.21□□□□□ -1.26
SYNE1-213ENST00000448038 HLA-CQ95604 372 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 PRAP1Q96NZ9 151 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 NSUN5Q96P11 429 aaKnown RBP7.21□□□□□ -1.26
SYNE1-213ENST00000448038 ZNF382Q96SR6 550 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 TXLNGYQ9BZA5 131 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 HRASLS2Q9NWW9 162 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 TAS2R1Q9NYW7 299 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 POLR1DQ9Y2S0 133 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 GMPPBQ9Y5P6 360 aa7.21□□□□□ -1.26
SYNE1-213ENST00000448038 LOC285095A0A1B0GVY8 99 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 A8MUI8 341 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 TMEM150CB9EJG8 249 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 MATN2O00339 956 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 LDB2O43679 373 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 PGDP52209 483 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 MEF2AQ02078 507 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 UAP1L1Q3KQV9 507 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 PHF19Q5T6S3 580 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 ISLR2Q6UXK2 745 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 TRPV3Q8NET8 790 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 SLC35G5Q96KT7 338 aa7.2□□□□□ -1.26
SYNE1-213ENST00000448038 TEFMQ96QE5 360 aaKnown RBP7.2□□□□□ -1.26
SYNE1-213ENST00000448038 GAL3ST4Q96RP7 486 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms